miRNA display CGI


Results 41 - 60 of 122 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28742 3' -57.5 NC_006146.1 + 168200 0.69 0.716482
Target:  5'- ---aGGGcCCGGGGCCGCgCGUggggAUGg -3'
miRNA:   3'- aggaCCCaGGUCCCGGCG-GUAa---UACg -5'
28742 3' -57.5 NC_006146.1 + 170064 0.69 0.716482
Target:  5'- ---aGGGcCCGGGGCCGCgCGUggggAUGg -3'
miRNA:   3'- aggaCCCaGGUCCCGGCG-GUAa---UACg -5'
28742 3' -57.5 NC_006146.1 + 110007 0.69 0.716482
Target:  5'- cUCCUGGaUCCAcuGGGCCccagGCCGgucUGCa -3'
miRNA:   3'- -AGGACCcAGGU--CCCGG----CGGUaauACG- -5'
28742 3' -57.5 NC_006146.1 + 169132 0.69 0.716482
Target:  5'- ---aGGGcCCGGGGCCGCgCGUggggAUGg -3'
miRNA:   3'- aggaCCCaGGUCCCGGCG-GUAa---UACg -5'
28742 3' -57.5 NC_006146.1 + 115507 0.69 0.735941
Target:  5'- gUCCUgGGGUCCcGGaGCagcguGCCAUUGcGCu -3'
miRNA:   3'- -AGGA-CCCAGGuCC-CGg----CGGUAAUaCG- -5'
28742 3' -57.5 NC_006146.1 + 33366 0.68 0.745543
Target:  5'- gCCggUGGGUCCGccGGGCCGCUgccccGCu -3'
miRNA:   3'- aGG--ACCCAGGU--CCCGGCGGuaauaCG- -5'
28742 3' -57.5 NC_006146.1 + 107623 0.68 0.764449
Target:  5'- aCCgGaGGUgCCAGGGCUGUCAUc-UGCc -3'
miRNA:   3'- aGGaC-CCA-GGUCCCGGCGGUAauACG- -5'
28742 3' -57.5 NC_006146.1 + 115832 0.68 0.764449
Target:  5'- gUCCcugcugUGGGUCCGauacGGCCGCCugug-GCa -3'
miRNA:   3'- -AGG------ACCCAGGUc---CCGGCGGuaauaCG- -5'
28742 3' -57.5 NC_006146.1 + 124288 0.68 0.768178
Target:  5'- gCC-GGGacaucaacaggcucuUCCAGGGCCagGCCAaugGUGCu -3'
miRNA:   3'- aGGaCCC---------------AGGUCCCGG--CGGUaa-UACG- -5'
28742 3' -57.5 NC_006146.1 + 55044 0.68 0.773735
Target:  5'- gUCgGGG-CCGGGGCCuGCCAcag-GCg -3'
miRNA:   3'- aGGaCCCaGGUCCCGG-CGGUaauaCG- -5'
28742 3' -57.5 NC_006146.1 + 137790 0.68 0.777416
Target:  5'- gCCU-GGUCCgccggauccgcuucgGGGGuCCGCCGguccgGUGCa -3'
miRNA:   3'- aGGAcCCAGG---------------UCCC-GGCGGUaa---UACG- -5'
28742 3' -57.5 NC_006146.1 + 135172 0.68 0.782898
Target:  5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3'
miRNA:   3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5'
28742 3' -57.5 NC_006146.1 + 135915 0.68 0.782898
Target:  5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3'
miRNA:   3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5'
28742 3' -57.5 NC_006146.1 + 135729 0.68 0.782898
Target:  5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3'
miRNA:   3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5'
28742 3' -57.5 NC_006146.1 + 135451 0.68 0.782898
Target:  5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3'
miRNA:   3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5'
28742 3' -57.5 NC_006146.1 + 135637 0.68 0.782898
Target:  5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3'
miRNA:   3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5'
28742 3' -57.5 NC_006146.1 + 135544 0.68 0.782898
Target:  5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3'
miRNA:   3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5'
28742 3' -57.5 NC_006146.1 + 135358 0.68 0.782898
Target:  5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3'
miRNA:   3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5'
28742 3' -57.5 NC_006146.1 + 135265 0.68 0.782898
Target:  5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3'
miRNA:   3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5'
28742 3' -57.5 NC_006146.1 + 135822 0.68 0.782898
Target:  5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3'
miRNA:   3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.