miRNA display CGI


Results 41 - 60 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28742 3' -57.5 NC_006146.1 + 116659 0.67 0.809563
Target:  5'- gCCUGa--CCGGGGCCGCCcagagGCu -3'
miRNA:   3'- aGGACccaGGUCCCGGCGGuaauaCG- -5'
28742 3' -57.5 NC_006146.1 + 42839 0.67 0.80082
Target:  5'- aUCaGGGccUCgAGGGCCGCCAg---GCc -3'
miRNA:   3'- aGGaCCC--AGgUCCCGGCGGUaauaCG- -5'
28742 3' -57.5 NC_006146.1 + 76256 0.67 0.80082
Target:  5'- uUCgUGGuccCCAGGGCgGCCAUcAUGg -3'
miRNA:   3'- -AGgACCca-GGUCCCGgCGGUAaUACg -5'
28742 3' -57.5 NC_006146.1 + 137309 0.68 0.782898
Target:  5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3'
miRNA:   3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5'
28742 3' -57.5 NC_006146.1 + 135358 0.68 0.782898
Target:  5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3'
miRNA:   3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5'
28742 3' -57.5 NC_006146.1 + 136659 0.68 0.782898
Target:  5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3'
miRNA:   3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5'
28742 3' -57.5 NC_006146.1 + 135451 0.68 0.782898
Target:  5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3'
miRNA:   3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5'
28742 3' -57.5 NC_006146.1 + 135822 0.68 0.782898
Target:  5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3'
miRNA:   3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5'
28742 3' -57.5 NC_006146.1 + 135915 0.68 0.782898
Target:  5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3'
miRNA:   3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5'
28742 3' -57.5 NC_006146.1 + 137216 0.68 0.782898
Target:  5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3'
miRNA:   3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5'
28742 3' -57.5 NC_006146.1 + 136751 0.68 0.782898
Target:  5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3'
miRNA:   3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5'
28742 3' -57.5 NC_006146.1 + 137123 0.68 0.782898
Target:  5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3'
miRNA:   3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5'
28742 3' -57.5 NC_006146.1 + 135729 0.68 0.782898
Target:  5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3'
miRNA:   3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5'
28742 3' -57.5 NC_006146.1 + 107623 0.68 0.764449
Target:  5'- aCCgGaGGUgCCAGGGCUGUCAUc-UGCc -3'
miRNA:   3'- aGGaC-CCA-GGUCCCGGCGGUAauACG- -5'
28742 3' -57.5 NC_006146.1 + 124288 0.68 0.768178
Target:  5'- gCC-GGGacaucaacaggcucuUCCAGGGCCagGCCAaugGUGCu -3'
miRNA:   3'- aGGaCCC---------------AGGUCCCGG--CGGUaa-UACG- -5'
28742 3' -57.5 NC_006146.1 + 55044 0.68 0.773735
Target:  5'- gUCgGGG-CCGGGGCCuGCCAcag-GCg -3'
miRNA:   3'- aGGaCCCaGGUCCCGG-CGGUaauaCG- -5'
28742 3' -57.5 NC_006146.1 + 135265 0.68 0.782898
Target:  5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3'
miRNA:   3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5'
28742 3' -57.5 NC_006146.1 + 136937 0.68 0.782898
Target:  5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3'
miRNA:   3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5'
28742 3' -57.5 NC_006146.1 + 136844 0.68 0.782898
Target:  5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3'
miRNA:   3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5'
28742 3' -57.5 NC_006146.1 + 137030 0.68 0.782898
Target:  5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3'
miRNA:   3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.