miRNA display CGI


Results 41 - 60 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28742 3' -57.5 NC_006146.1 + 136380 0.68 0.782898
Target:  5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3'
miRNA:   3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5'
28742 3' -57.5 NC_006146.1 + 124288 0.68 0.768178
Target:  5'- gCC-GGGacaucaacaggcucuUCCAGGGCCagGCCAaugGUGCu -3'
miRNA:   3'- aGGaCCC---------------AGGUCCCGG--CGGUaa-UACG- -5'
28742 3' -57.5 NC_006146.1 + 162864 0.71 0.596211
Target:  5'- gCC-GGGUCCAGcGGgUGCCAgcgauagAUGCa -3'
miRNA:   3'- aGGaCCCAGGUC-CCgGCGGUaa-----UACG- -5'
28742 3' -57.5 NC_006146.1 + 136287 0.68 0.782898
Target:  5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3'
miRNA:   3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5'
28742 3' -57.5 NC_006146.1 + 5201 0.71 0.596211
Target:  5'- cCCUGGGcCUGGGGgaGCUAgggGUGCa -3'
miRNA:   3'- aGGACCCaGGUCCCggCGGUaa-UACG- -5'
28742 3' -57.5 NC_006146.1 + 157638 0.67 0.826571
Target:  5'- gCCUGGGUCUuGGGCaccaGCCccUGgaccagGCu -3'
miRNA:   3'- aGGACCCAGGuCCCGg---CGGuaAUa-----CG- -5'
28742 3' -57.5 NC_006146.1 + 110161 0.7 0.64662
Target:  5'- gUCUUGGcggaucucuGUCCAGGGCCucagcGCCGguuggagAUGCg -3'
miRNA:   3'- -AGGACC---------CAGGUCCCGG-----CGGUaa-----UACG- -5'
28742 3' -57.5 NC_006146.1 + 95061 0.67 0.818149
Target:  5'- gUUUGuGGUCCAGaGCUGCCccugGUGCa -3'
miRNA:   3'- aGGAC-CCAGGUCcCGGCGGuaa-UACG- -5'
28742 3' -57.5 NC_006146.1 + 56648 0.67 0.809563
Target:  5'- gUCCagGGGUCCGucgaucGCCGCCGUc-UGCa -3'
miRNA:   3'- -AGGa-CCCAGGUcc----CGGCGGUAauACG- -5'
28742 3' -57.5 NC_006146.1 + 137495 0.68 0.782898
Target:  5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3'
miRNA:   3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5'
28742 3' -57.5 NC_006146.1 + 137216 0.68 0.782898
Target:  5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3'
miRNA:   3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5'
28742 3' -57.5 NC_006146.1 + 136844 0.68 0.782898
Target:  5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3'
miRNA:   3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5'
28742 3' -57.5 NC_006146.1 + 136566 0.68 0.782898
Target:  5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3'
miRNA:   3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5'
28742 3' -57.5 NC_006146.1 + 136008 0.68 0.782898
Target:  5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3'
miRNA:   3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5'
28742 3' -57.5 NC_006146.1 + 135729 0.68 0.782898
Target:  5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3'
miRNA:   3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5'
28742 3' -57.5 NC_006146.1 + 135358 0.68 0.782898
Target:  5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3'
miRNA:   3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5'
28742 3' -57.5 NC_006146.1 + 137790 0.68 0.777416
Target:  5'- gCCU-GGUCCgccggauccgcuucgGGGGuCCGCCGguccgGUGCa -3'
miRNA:   3'- aGGAcCCAGG---------------UCCC-GGCGGUaa---UACG- -5'
28742 3' -57.5 NC_006146.1 + 115507 0.69 0.735941
Target:  5'- gUCCUgGGGUCCcGGaGCagcguGCCAUUGcGCu -3'
miRNA:   3'- -AGGA-CCCAGGuCC-CGg----CGGUAAUaCG- -5'
28742 3' -57.5 NC_006146.1 + 168200 0.69 0.716482
Target:  5'- ---aGGGcCCGGGGCCGCgCGUggggAUGg -3'
miRNA:   3'- aggaCCCaGGUCCCGGCG-GUAa---UACg -5'
28742 3' -57.5 NC_006146.1 + 153208 0.69 0.68679
Target:  5'- gCUUGGccgCCAcGGGCCGCCcgUAgaUGCc -3'
miRNA:   3'- aGGACCca-GGU-CCCGGCGGuaAU--ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.