Results 41 - 60 of 122 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28742 | 3' | -57.5 | NC_006146.1 | + | 110161 | 0.7 | 0.64662 |
Target: 5'- gUCUUGGcggaucucuGUCCAGGGCCucagcGCCGguuggagAUGCg -3' miRNA: 3'- -AGGACC---------CAGGUCCCGG-----CGGUaa-----UACG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 114171 | 0.71 | 0.616347 |
Target: 5'- cCCUGGGcagCAGGGUCaCCAUgAUGCa -3' miRNA: 3'- aGGACCCag-GUCCCGGcGGUAaUACG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 115507 | 0.69 | 0.735941 |
Target: 5'- gUCCUgGGGUCCcGGaGCagcguGCCAUUGcGCu -3' miRNA: 3'- -AGGA-CCCAGGuCC-CGg----CGGUAAUaCG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 115832 | 0.68 | 0.764449 |
Target: 5'- gUCCcugcugUGGGUCCGauacGGCCGCCugug-GCa -3' miRNA: 3'- -AGG------ACCCAGGUc---CCGGCGGuaauaCG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 116659 | 0.67 | 0.809563 |
Target: 5'- gCCUGa--CCGGGGCCGCCcagagGCu -3' miRNA: 3'- aGGACccaGGUCCCGGCGGuaauaCG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 117540 | 0.66 | 0.873246 |
Target: 5'- cCCUcGGGgCCuGGGCCGCauucagGCu -3' miRNA: 3'- aGGA-CCCaGGuCCCGGCGguaauaCG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 118975 | 0.66 | 0.873246 |
Target: 5'- aCCgca--CCGGGGCCGCCcgUcgGUGCc -3' miRNA: 3'- aGGacccaGGUCCCGGCGGuaA--UACG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 120104 | 0.67 | 0.809563 |
Target: 5'- cCCUGGGaCCGuacGGaCGCCcgUGUGCc -3' miRNA: 3'- aGGACCCaGGUc--CCgGCGGuaAUACG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 121481 | 0.71 | 0.606269 |
Target: 5'- gCC-GGGUCCaucgugGGGGCCGCCAa----- -3' miRNA: 3'- aGGaCCCAGG------UCCCGGCGGUaauacg -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 123059 | 0.66 | 0.865959 |
Target: 5'- gCC-GGGUCCAGGGaCGCgucc-UGCg -3' miRNA: 3'- aGGaCCCAGGUCCCgGCGguaauACG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 124288 | 0.68 | 0.768178 |
Target: 5'- gCC-GGGacaucaacaggcucuUCCAGGGCCagGCCAaugGUGCu -3' miRNA: 3'- aGGaCCC---------------AGGUCCCGG--CGGUaa-UACG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 135172 | 0.68 | 0.782898 |
Target: 5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3' miRNA: 3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 135265 | 0.68 | 0.782898 |
Target: 5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3' miRNA: 3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 135358 | 0.68 | 0.782898 |
Target: 5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3' miRNA: 3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 135451 | 0.68 | 0.782898 |
Target: 5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3' miRNA: 3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 135544 | 0.68 | 0.782898 |
Target: 5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3' miRNA: 3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 135637 | 0.68 | 0.782898 |
Target: 5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3' miRNA: 3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 135729 | 0.68 | 0.782898 |
Target: 5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3' miRNA: 3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 135822 | 0.68 | 0.782898 |
Target: 5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3' miRNA: 3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 135915 | 0.68 | 0.782898 |
Target: 5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3' miRNA: 3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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