Results 41 - 60 of 122 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28742 | 3' | -57.5 | NC_006146.1 | + | 76256 | 0.67 | 0.80082 |
Target: 5'- uUCgUGGuccCCAGGGCgGCCAUcAUGg -3' miRNA: 3'- -AGgACCca-GGUCCCGgCGGUAaUACg -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 33099 | 0.67 | 0.80082 |
Target: 5'- cUCUGGGgcagCCGGguGGCCGCCGgcggGUu -3' miRNA: 3'- aGGACCCa---GGUC--CCGGCGGUaauaCG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 42839 | 0.67 | 0.80082 |
Target: 5'- aUCaGGGccUCgAGGGCCGCCAg---GCc -3' miRNA: 3'- aGGaCCC--AGgUCCCGGCGGUaauaCG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 33244 | 0.68 | 0.791929 |
Target: 5'- gCCggcGGGUCCGccGGGCCGCUgccccGCu -3' miRNA: 3'- aGGa--CCCAGGU--CCCGGCGGuaauaCG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 100899 | 0.68 | 0.791032 |
Target: 5'- gCCUGGGUCUcggccguGGGGUCcCCGaccGUGCu -3' miRNA: 3'- aGGACCCAGG-------UCCCGGcGGUaa-UACG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 137495 | 0.68 | 0.782898 |
Target: 5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3' miRNA: 3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 136751 | 0.68 | 0.782898 |
Target: 5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3' miRNA: 3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 135729 | 0.68 | 0.782898 |
Target: 5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3' miRNA: 3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 136008 | 0.68 | 0.782898 |
Target: 5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3' miRNA: 3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 136101 | 0.68 | 0.782898 |
Target: 5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3' miRNA: 3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 137030 | 0.68 | 0.782898 |
Target: 5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3' miRNA: 3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 136844 | 0.68 | 0.782898 |
Target: 5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3' miRNA: 3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 136566 | 0.68 | 0.782898 |
Target: 5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3' miRNA: 3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 135915 | 0.68 | 0.782898 |
Target: 5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3' miRNA: 3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 135637 | 0.68 | 0.782898 |
Target: 5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3' miRNA: 3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 135451 | 0.68 | 0.782898 |
Target: 5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3' miRNA: 3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 135172 | 0.68 | 0.782898 |
Target: 5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3' miRNA: 3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 136937 | 0.68 | 0.782898 |
Target: 5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3' miRNA: 3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 137309 | 0.68 | 0.782898 |
Target: 5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3' miRNA: 3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 137123 | 0.68 | 0.782898 |
Target: 5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3' miRNA: 3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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