miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28742 3' -57.5 NC_006146.1 + 157759 0.66 0.865958
Target:  5'- gCCUGGGaggUCCGGGGUguugaGCCugc-UGCc -3'
miRNA:   3'- aGGACCC---AGGUCCCGg----CGGuaauACG- -5'
28742 3' -57.5 NC_006146.1 + 91763 0.66 0.850775
Target:  5'- uUCUUGGGUgggugCCuGGGgUGCCGUgcugGCa -3'
miRNA:   3'- -AGGACCCA-----GGuCCCgGCGGUAaua-CG- -5'
28742 3' -57.5 NC_006146.1 + 30382 0.66 0.842891
Target:  5'- cCCaGGG-CUagguuugcuguAGGGCCGCCAggugGCg -3'
miRNA:   3'- aGGaCCCaGG-----------UCCCGGCGGUaauaCG- -5'
28742 3' -57.5 NC_006146.1 + 154682 0.67 0.83482
Target:  5'- gCCUGGGagUCCGGGGUguugaGCCugc-UGCc -3'
miRNA:   3'- aGGACCC--AGGUCCCGg----CGGuaauACG- -5'
28742 3' -57.5 NC_006146.1 + 35603 0.67 0.83482
Target:  5'- cCCUGGGUCUguGGGcaGCUGCC-UUA-GCc -3'
miRNA:   3'- aGGACCCAGG--UCC--CGGCGGuAAUaCG- -5'
28742 3' -57.5 NC_006146.1 + 157638 0.67 0.826571
Target:  5'- gCCUGGGUCUuGGGCaccaGCCccUGgaccagGCu -3'
miRNA:   3'- aGGACCCAGGuCCCGg---CGGuaAUa-----CG- -5'
28742 3' -57.5 NC_006146.1 + 42623 0.67 0.82657
Target:  5'- gCCUGGGgCUcGGccGCCGCCGUgg-GCc -3'
miRNA:   3'- aGGACCCaGGuCC--CGGCGGUAauaCG- -5'
28742 3' -57.5 NC_006146.1 + 155709 0.67 0.82657
Target:  5'- gUgUGGGUCCuuguGGGucuCCGCCgguugggcuGUUGUGCc -3'
miRNA:   3'- aGgACCCAGGu---CCC---GGCGG---------UAAUACG- -5'
28742 3' -57.5 NC_006146.1 + 152632 0.67 0.82657
Target:  5'- gUgUGGGUCCuuguGGGucuCCGCCgguugggcuGUUGUGCc -3'
miRNA:   3'- aGgACCCAGGu---CCC---GGCGG---------UAAUACG- -5'
28742 3' -57.5 NC_006146.1 + 149554 0.67 0.82657
Target:  5'- gUgUGGGUCCuuguGGGucuCCGCCgguugggcuGUUGUGCc -3'
miRNA:   3'- aGgACCCAGGu---CCC---GGCGG---------UAAUACG- -5'
28742 3' -57.5 NC_006146.1 + 146476 0.67 0.82657
Target:  5'- gUgUGGGUCCuuguGGGucuCCGCCgguugggcuGUUGUGCc -3'
miRNA:   3'- aGgACCCAGGu---CCC---GGCGG---------UAAUACG- -5'
28742 3' -57.5 NC_006146.1 + 143398 0.67 0.82657
Target:  5'- gUgUGGGUCCuuguGGGucuCCGCCgguugggcuGUUGUGCc -3'
miRNA:   3'- aGgACCCAGGu---CCC---GGCGG---------UAAUACG- -5'
28742 3' -57.5 NC_006146.1 + 105193 0.67 0.82657
Target:  5'- aCCgGGG-CCGGGGa-GCCGgggGUGCc -3'
miRNA:   3'- aGGaCCCaGGUCCCggCGGUaa-UACG- -5'
28742 3' -57.5 NC_006146.1 + 8516 0.67 0.818149
Target:  5'- aCCgGGGUCCcgggcgcGGGCgCGCCAagggGCu -3'
miRNA:   3'- aGGaCCCAGGu------CCCG-GCGGUaauaCG- -5'
28742 3' -57.5 NC_006146.1 + 8284 0.67 0.818149
Target:  5'- cUCUGGGagccccacucCCGGGGUCGCUcucUGUGCu -3'
miRNA:   3'- aGGACCCa---------GGUCCCGGCGGua-AUACG- -5'
28742 3' -57.5 NC_006146.1 + 95061 0.67 0.818149
Target:  5'- gUUUGuGGUCCAGaGCUGCCccugGUGCa -3'
miRNA:   3'- aGGAC-CCAGGUCcCGGCGGuaa-UACG- -5'
28742 3' -57.5 NC_006146.1 + 116659 0.67 0.809563
Target:  5'- gCCUGa--CCGGGGCCGCCcagagGCu -3'
miRNA:   3'- aGGACccaGGUCCCGGCGGuaauaCG- -5'
28742 3' -57.5 NC_006146.1 + 47762 0.67 0.809563
Target:  5'- cCCUGGcGaguacggccUCCAGGGCCGUCugaaaGCc -3'
miRNA:   3'- aGGACC-C---------AGGUCCCGGCGGuaauaCG- -5'
28742 3' -57.5 NC_006146.1 + 120104 0.67 0.809563
Target:  5'- cCCUGGGaCCGuacGGaCGCCcgUGUGCc -3'
miRNA:   3'- aGGACCCaGGUc--CCgGCGGuaAUACG- -5'
28742 3' -57.5 NC_006146.1 + 56648 0.67 0.809563
Target:  5'- gUCCagGGGUCCGucgaucGCCGCCGUc-UGCa -3'
miRNA:   3'- -AGGa-CCCAGGUcc----CGGCGGUAauACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.