Results 1 - 20 of 122 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28742 | 3' | -57.5 | NC_006146.1 | + | 170064 | 0.69 | 0.716482 |
Target: 5'- ---aGGGcCCGGGGCCGCgCGUggggAUGg -3' miRNA: 3'- aggaCCCaGGUCCCGGCG-GUAa---UACg -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 169132 | 0.69 | 0.716482 |
Target: 5'- ---aGGGcCCGGGGCCGCgCGUggggAUGg -3' miRNA: 3'- aggaCCCaGGUCCCGGCG-GUAa---UACg -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 168200 | 0.69 | 0.716482 |
Target: 5'- ---aGGGcCCGGGGCCGCgCGUggggAUGg -3' miRNA: 3'- aggaCCCaGGUCCCGGCG-GUAa---UACg -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 167268 | 0.69 | 0.716482 |
Target: 5'- ---aGGGcCCGGGGCCGCgCGUggggAUGg -3' miRNA: 3'- aggaCCCaGGUCCCGGCG-GUAa---UACg -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 166532 | 0.66 | 0.880324 |
Target: 5'- gCCUGGGgagCCcgcGGGGCCgugGCCAcgucGCu -3' miRNA: 3'- aGGACCCa--GG---UCCCGG---CGGUaauaCG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 162864 | 0.71 | 0.596211 |
Target: 5'- gCC-GGGUCCAGcGGgUGCCAgcgauagAUGCa -3' miRNA: 3'- aGGaCCCAGGUC-CCgGCGGUaa-----UACG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 158071 | 0.73 | 0.488597 |
Target: 5'- cUCCUcGGGUCC--GGCCGCCGgaggGCu -3' miRNA: 3'- -AGGA-CCCAGGucCCGGCGGUaauaCG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 157971 | 0.69 | 0.706643 |
Target: 5'- aCCgggcgGGG-CCAGGGCCuCCAgag-GCa -3' miRNA: 3'- aGGa----CCCaGGUCCCGGcGGUaauaCG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 157759 | 0.66 | 0.865958 |
Target: 5'- gCCUGGGaggUCCGGGGUguugaGCCugc-UGCc -3' miRNA: 3'- aGGACCC---AGGUCCCGg----CGGuaauACG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 157638 | 0.67 | 0.826571 |
Target: 5'- gCCUGGGUCUuGGGCaccaGCCccUGgaccagGCu -3' miRNA: 3'- aGGACCCAGGuCCCGg---CGGuaAUa-----CG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 157445 | 0.66 | 0.873246 |
Target: 5'- cUCUGGGgCCAcccGGGCUGCCGgg--GUc -3' miRNA: 3'- aGGACCCaGGU---CCCGGCGGUaauaCG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 156353 | 1.12 | 0.001322 |
Target: 5'- uUCCUGGGUCCAGGGCCGCCAUUAUGCg -3' miRNA: 3'- -AGGACCCAGGUCCCGGCGGUAAUACG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 155709 | 0.67 | 0.82657 |
Target: 5'- gUgUGGGUCCuuguGGGucuCCGCCgguugggcuGUUGUGCc -3' miRNA: 3'- aGgACCCAGGu---CCC---GGCGG---------UAAUACG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 154992 | 0.73 | 0.488597 |
Target: 5'- cUCCUcGGGUCC--GGCCGCCGgaggGCu -3' miRNA: 3'- -AGGA-CCCAGGucCCGGCGGUaauaCG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 154893 | 0.69 | 0.706643 |
Target: 5'- aCCgggcgGGG-CCAGGGCCuCCAgag-GCa -3' miRNA: 3'- aGGa----CCCaGGUCCCGGcGGUaauaCG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 154682 | 0.67 | 0.83482 |
Target: 5'- gCCUGGGagUCCGGGGUguugaGCCugc-UGCc -3' miRNA: 3'- aGGACCC--AGGUCCCGg----CGGuaauACG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 154367 | 0.66 | 0.873246 |
Target: 5'- cUCUGGGgCCAcccGGGCUGCCGgg--GUc -3' miRNA: 3'- aGGACCCaGGU---CCCGGCGGUaauaCG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 153275 | 1.12 | 0.001322 |
Target: 5'- uUCCUGGGUCCAGGGCCGCCAUUAUGCg -3' miRNA: 3'- -AGGACCCAGGUCCCGGCGGUAAUACG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 153208 | 0.69 | 0.68679 |
Target: 5'- gCUUGGccgCCAcGGGCCGCCcgUAgaUGCc -3' miRNA: 3'- aGGACCca-GGU-CCCGGCGGuaAU--ACG- -5' |
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28742 | 3' | -57.5 | NC_006146.1 | + | 152632 | 0.67 | 0.82657 |
Target: 5'- gUgUGGGUCCuuguGGGucuCCGCCgguugggcuGUUGUGCc -3' miRNA: 3'- aGgACCCAGGu---CCC---GGCGG---------UAAUACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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