miRNA display CGI


Results 21 - 40 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28743 5' -64.9 NC_006146.1 + 153950 0.67 0.495397
Target:  5'- gCCCgCCGCUCCCCguuGGGCacGGuGCCu -3'
miRNA:   3'- gGGGaGGUGAGGGG---CCCGgaUC-CGGc -5'
28743 5' -64.9 NC_006146.1 + 153292 0.66 0.568682
Target:  5'- gCCUuuUCUGCUCCaggcaccaggcCCGGGCC-AGGUCGc -3'
miRNA:   3'- gGGG--AGGUGAGG-----------GGCCCGGaUCCGGC- -5'
28743 5' -64.9 NC_006146.1 + 151992 0.71 0.301411
Target:  5'- gCCCgccggCUCCAa-CCUCGGGCCUcuGGGCUGg -3'
miRNA:   3'- -GGG-----GAGGUgaGGGGCCCGGA--UCCGGC- -5'
28743 5' -64.9 NC_006146.1 + 151757 1.1 0.000564
Target:  5'- cCCCCUCCACUCCCCGGGCCUAGGCCGa -3'
miRNA:   3'- -GGGGAGGUGAGGGGCCCGGAUCCGGC- -5'
28743 5' -64.9 NC_006146.1 + 151356 0.68 0.46037
Target:  5'- gCUCCUCCG-UCCUCuggacuagGGGcCCUGGGCCc -3'
miRNA:   3'- -GGGGAGGUgAGGGG--------CCC-GGAUCCGGc -5'
28743 5' -64.9 NC_006146.1 + 149269 0.66 0.549109
Target:  5'- -gCCgugCCGCUCCgcguaggCCGGGuCCUcGGCCa -3'
miRNA:   3'- ggGGa--GGUGAGG-------GGCCC-GGAuCCGGc -5'
28743 5' -64.9 NC_006146.1 + 148914 0.71 0.301411
Target:  5'- gCCCgccggCUCCAa-CCUCGGGCCUcuGGGCUGg -3'
miRNA:   3'- -GGG-----GAGGUgaGGGGCCCGGA--UCCGGC- -5'
28743 5' -64.9 NC_006146.1 + 148680 0.99 0.003522
Target:  5'- cCCCCUCCACUCCCCGGGCCUA-GCCGa -3'
miRNA:   3'- -GGGGAGGUGAGGGGCCCGGAUcCGGC- -5'
28743 5' -64.9 NC_006146.1 + 148278 0.68 0.46037
Target:  5'- gCUCCUCCG-UCCUCuggacuagGGGcCCUGGGCCc -3'
miRNA:   3'- -GGGGAGGUgAGGGG--------CCC-GGAUCCGGc -5'
28743 5' -64.9 NC_006146.1 + 147437 0.68 0.46037
Target:  5'- aCCUggCCACggCCaGGGCCUcguAGGCCGa -3'
miRNA:   3'- gGGGa-GGUGagGGgCCCGGA---UCCGGC- -5'
28743 5' -64.9 NC_006146.1 + 145836 0.71 0.301411
Target:  5'- gCCCgccggCUCCAa-CCUCGGGCCUcuGGGCUGg -3'
miRNA:   3'- -GGG-----GAGGUgaGGGGCCCGGA--UCCGGC- -5'
28743 5' -64.9 NC_006146.1 + 145602 1.1 0.000564
Target:  5'- cCCCCUCCACUCCCCGGGCCUAGGCCGa -3'
miRNA:   3'- -GGGGAGGUGAGGGGCCCGGAUCCGGC- -5'
28743 5' -64.9 NC_006146.1 + 145200 0.68 0.46037
Target:  5'- gCUCCUCCG-UCCUCuggacuagGGGcCCUGGGCCc -3'
miRNA:   3'- -GGGGAGGUgAGGGG--------CCC-GGAUCCGGc -5'
28743 5' -64.9 NC_006146.1 + 144722 0.66 0.578065
Target:  5'- cCCCCUCCGaccuaaUCCCCu--CC-AGGCCGc -3'
miRNA:   3'- -GGGGAGGUg-----AGGGGcccGGaUCCGGC- -5'
28743 5' -64.9 NC_006146.1 + 142758 0.71 0.301411
Target:  5'- gCCCgccggCUCCAa-CCUCGGGCCUcuGGGCUGg -3'
miRNA:   3'- -GGG-----GAGGUgaGGGGCCCGGA--UCCGGC- -5'
28743 5' -64.9 NC_006146.1 + 142524 1.1 0.000564
Target:  5'- cCCCCUCCACUCCCCGGGCCUAGGCCGa -3'
miRNA:   3'- -GGGGAGGUGAGGGGCCCGGAUCCGGC- -5'
28743 5' -64.9 NC_006146.1 + 142122 0.68 0.46037
Target:  5'- gCUCCUCCG-UCCUCuggacuagGGGcCCUGGGCCc -3'
miRNA:   3'- -GGGGAGGUgAGGGG--------CCC-GGAUCCGGc -5'
28743 5' -64.9 NC_006146.1 + 139219 0.69 0.394532
Target:  5'- gUCCC-CCACccuUCCCUGGucCCUGGGCUGu -3'
miRNA:   3'- -GGGGaGGUG---AGGGGCCc-GGAUCCGGC- -5'
28743 5' -64.9 NC_006146.1 + 138853 0.66 0.559337
Target:  5'- gCUCgCCACg-CCCGGGucaugaCCUGGGCCa -3'
miRNA:   3'- gGGGaGGUGagGGGCCC------GGAUCCGGc -5'
28743 5' -64.9 NC_006146.1 + 137870 0.68 0.43498
Target:  5'- gUCCCgggCCcCgCCCCGGGCCggcaggGGGUCc -3'
miRNA:   3'- -GGGGa--GGuGaGGGGCCCGGa-----UCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.