miRNA display CGI


Results 21 - 40 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28743 5' -64.9 NC_006146.1 + 4585 0.7 0.356599
Target:  5'- cCCCCaUCCGCUCUCUGaGCCUAGaCCc -3'
miRNA:   3'- -GGGG-AGGUGAGGGGCcCGGAUCcGGc -5'
28743 5' -64.9 NC_006146.1 + 9151 0.66 0.549109
Target:  5'- cCCCCUcggaccucagccgCCAC-CCCCGGGCUacaaGGGUUc -3'
miRNA:   3'- -GGGGA-------------GGUGaGGGGCCCGGa---UCCGGc -5'
28743 5' -64.9 NC_006146.1 + 10803 0.66 0.559337
Target:  5'- aUCCUCCACUagaggccgCCCaUGGGCCaugagaUAGGCUc -3'
miRNA:   3'- gGGGAGGUGA--------GGG-GCCCGG------AUCCGGc -5'
28743 5' -64.9 NC_006146.1 + 10997 0.66 0.587481
Target:  5'- gCCCC-CCAuCUUCgaGGGCCccGGCCu -3'
miRNA:   3'- -GGGGaGGU-GAGGggCCCGGauCCGGc -5'
28743 5' -64.9 NC_006146.1 + 11837 0.72 0.253049
Target:  5'- aCCCCUugcgccgggccCUGCUUCUCGGGCUUGGGgCGg -3'
miRNA:   3'- -GGGGA-----------GGUGAGGGGCCCGGAUCCgGC- -5'
28743 5' -64.9 NC_006146.1 + 12342 0.77 0.122822
Target:  5'- uCCCCU-CGC-CCCUGGGCCUcAGGCCc -3'
miRNA:   3'- -GGGGAgGUGaGGGGCCCGGA-UCCGGc -5'
28743 5' -64.9 NC_006146.1 + 12365 0.66 0.553751
Target:  5'- -nCCUCCGCgUCCCCguccuccagagucacGGGCUacAGGCCc -3'
miRNA:   3'- ggGGAGGUG-AGGGG---------------CCCGGa-UCCGGc -5'
28743 5' -64.9 NC_006146.1 + 13047 0.69 0.41042
Target:  5'- aUCCUCCGagaCUCCGGGCCccaaggcGGCCGc -3'
miRNA:   3'- gGGGAGGUga-GGGGCCCGGau-----CCGGC- -5'
28743 5' -64.9 NC_006146.1 + 13416 0.71 0.321303
Target:  5'- -aCCUCagggugcCUCCCCGGGuCCcAGGCCa -3'
miRNA:   3'- ggGGAGgu-----GAGGGGCCC-GGaUCCGGc -5'
28743 5' -64.9 NC_006146.1 + 13679 0.73 0.234508
Target:  5'- cCCCCUCCACcccagucccccccCCCCGcuuucGGCCUcucggguccaccAGGCCGg -3'
miRNA:   3'- -GGGGAGGUGa------------GGGGC-----CCGGA------------UCCGGC- -5'
28743 5' -64.9 NC_006146.1 + 13811 0.72 0.276387
Target:  5'- cCCCCUCagcuuguCUCCCCaccGGGUCcaucAGGCCGg -3'
miRNA:   3'- -GGGGAGgu-----GAGGGG---CCCGGa---UCCGGC- -5'
28743 5' -64.9 NC_006146.1 + 13930 0.75 0.167491
Target:  5'- cCCCCUCCucucuccCUCCCCGaGGCCccGGCUc -3'
miRNA:   3'- -GGGGAGGu------GAGGGGC-CCGGauCCGGc -5'
28743 5' -64.9 NC_006146.1 + 13979 0.67 0.477725
Target:  5'- gCCCgucagcgCCGC-CaCCCaGGCCUcGGCCGg -3'
miRNA:   3'- gGGGa------GGUGaG-GGGcCCGGAuCCGGC- -5'
28743 5' -64.9 NC_006146.1 + 14031 0.7 0.335101
Target:  5'- gCCCCgUCCACccugUCCCCcgcaGGCC-AGGCCc -3'
miRNA:   3'- -GGGG-AGGUG----AGGGGc---CCGGaUCCGGc -5'
28743 5' -64.9 NC_006146.1 + 14083 0.68 0.43498
Target:  5'- uCCCCaCCcCUCCCCGGccacCCcAGGCCc -3'
miRNA:   3'- -GGGGaGGuGAGGGGCCc---GGaUCCGGc -5'
28743 5' -64.9 NC_006146.1 + 14197 0.67 0.51336
Target:  5'- cCCCCUuuGC-CCCCuGGC--AGGCCa -3'
miRNA:   3'- -GGGGAggUGaGGGGcCCGgaUCCGGc -5'
28743 5' -64.9 NC_006146.1 + 14387 0.7 0.34216
Target:  5'- gCCUC-CCGCUCCCCuccGGGCCgcguacGCCGu -3'
miRNA:   3'- -GGGGaGGUGAGGGG---CCCGGauc---CGGC- -5'
28743 5' -64.9 NC_006146.1 + 14876 0.69 0.394532
Target:  5'- gCCCUCCagGCcCUCCGaGGCCccAGGCCu -3'
miRNA:   3'- gGGGAGG--UGaGGGGC-CCGGa-UCCGGc -5'
28743 5' -64.9 NC_006146.1 + 15027 0.66 0.559337
Target:  5'- aCCUUCCAgg-CCCGGGCCcccaggucucGGGCCa -3'
miRNA:   3'- gGGGAGGUgagGGGCCCGGa---------UCCGGc -5'
28743 5' -64.9 NC_006146.1 + 15421 0.77 0.122822
Target:  5'- uCCCCU-CGC-CCCUGGGCCUcAGGCCc -3'
miRNA:   3'- -GGGGAgGUGaGGGGCCCGGA-UCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.