Results 41 - 60 of 314 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28743 | 5' | -64.9 | NC_006146.1 | + | 15444 | 0.66 | 0.553751 |
Target: 5'- -nCCUCCGCgUCCCCguccuccagagucacGGGCUacAGGCCc -3' miRNA: 3'- ggGGAGGUG-AGGGG---------------CCCGGa-UCCGGc -5' |
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28743 | 5' | -64.9 | NC_006146.1 | + | 16125 | 0.69 | 0.41042 |
Target: 5'- aUCCUCCGagaCUCCGGGCCccaaggcGGCCGc -3' miRNA: 3'- gGGGAGGUga-GGGGCCCGGau-----CCGGC- -5' |
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28743 | 5' | -64.9 | NC_006146.1 | + | 16494 | 0.71 | 0.321303 |
Target: 5'- -aCCUCagggugcCUCCCCGGGuCCcAGGCCa -3' miRNA: 3'- ggGGAGgu-----GAGGGGCCC-GGaUCCGGc -5' |
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28743 | 5' | -64.9 | NC_006146.1 | + | 16757 | 0.73 | 0.234508 |
Target: 5'- cCCCCUCCACcccagucccccccCCCCGcuuucGGCCUcucggguccaccAGGCCGg -3' miRNA: 3'- -GGGGAGGUGa------------GGGGC-----CCGGA------------UCCGGC- -5' |
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28743 | 5' | -64.9 | NC_006146.1 | + | 16889 | 0.72 | 0.276387 |
Target: 5'- cCCCCUCagcuuguCUCCCCaccGGGUCcaucAGGCCGg -3' miRNA: 3'- -GGGGAGgu-----GAGGGG---CCCGGa---UCCGGC- -5' |
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28743 | 5' | -64.9 | NC_006146.1 | + | 17007 | 0.75 | 0.167491 |
Target: 5'- cCCCCUCCucucuccCUCCCCGaGGCCccGGCUc -3' miRNA: 3'- -GGGGAGGu------GAGGGGC-CCGGauCCGGc -5' |
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28743 | 5' | -64.9 | NC_006146.1 | + | 17109 | 0.7 | 0.335101 |
Target: 5'- gCCCCgUCCACccugUCCCCcgcaGGCC-AGGCCc -3' miRNA: 3'- -GGGG-AGGUG----AGGGGc---CCGGaUCCGGc -5' |
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28743 | 5' | -64.9 | NC_006146.1 | + | 17161 | 0.68 | 0.43498 |
Target: 5'- uCCCCaCCcCUCCCCGGccacCCcAGGCCc -3' miRNA: 3'- -GGGGaGGuGAGGGGCCc---GGaUCCGGc -5' |
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28743 | 5' | -64.9 | NC_006146.1 | + | 17275 | 0.67 | 0.51336 |
Target: 5'- cCCCCUuuGC-CCCCuGGC--AGGCCa -3' miRNA: 3'- -GGGGAggUGaGGGGcCCGgaUCCGGc -5' |
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28743 | 5' | -64.9 | NC_006146.1 | + | 17954 | 0.71 | 0.288686 |
Target: 5'- gCCCUCCAggCCuCCGaGGCCccAGGCCu -3' miRNA: 3'- gGGGAGGUgaGG-GGC-CCGGa-UCCGGc -5' |
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28743 | 5' | -64.9 | NC_006146.1 | + | 18105 | 0.66 | 0.559337 |
Target: 5'- aCCUUCCAgg-CCCGGGCCcccaggucucGGGCCa -3' miRNA: 3'- gGGGAGGUgagGGGCCCGGa---------UCCGGc -5' |
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28743 | 5' | -64.9 | NC_006146.1 | + | 18358 | 0.66 | 0.587481 |
Target: 5'- aCCCCUUUgguggcauGCUCaCCCuGGuCCUGguGGCCGg -3' miRNA: 3'- -GGGGAGG--------UGAG-GGGcCC-GGAU--CCGGC- -5' |
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28743 | 5' | -64.9 | NC_006146.1 | + | 18499 | 0.77 | 0.122822 |
Target: 5'- uCCCCU-CGC-CCCUGGGCCUcAGGCCc -3' miRNA: 3'- -GGGGAgGUGaGGGGCCCGGA-UCCGGc -5' |
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28743 | 5' | -64.9 | NC_006146.1 | + | 18522 | 0.66 | 0.553751 |
Target: 5'- -nCCUCCGCgUCCCCguccuccagagucacGGGCUacAGGCCc -3' miRNA: 3'- ggGGAGGUG-AGGGG---------------CCCGGa-UCCGGc -5' |
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28743 | 5' | -64.9 | NC_006146.1 | + | 18843 | 0.67 | 0.51336 |
Target: 5'- -gCUUCCAgaCCCCGGGCgCU--GCCGg -3' miRNA: 3'- ggGGAGGUgaGGGGCCCG-GAucCGGC- -5' |
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28743 | 5' | -64.9 | NC_006146.1 | + | 19203 | 0.69 | 0.41042 |
Target: 5'- aUCCUCCGagaCUCCGGGCCccaaggcGGCCGc -3' miRNA: 3'- gGGGAGGUga-GGGGCCCGGau-----CCGGC- -5' |
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28743 | 5' | -64.9 | NC_006146.1 | + | 19572 | 0.71 | 0.321303 |
Target: 5'- -aCCUCagggugcCUCCCCGGGuCCcAGGCCa -3' miRNA: 3'- ggGGAGgu-----GAGGGGCCC-GGaUCCGGc -5' |
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28743 | 5' | -64.9 | NC_006146.1 | + | 19835 | 0.73 | 0.234508 |
Target: 5'- cCCCCUCCACcccagucccccccCCCCGcuuucGGCCUcucggguccaccAGGCCGg -3' miRNA: 3'- -GGGGAGGUGa------------GGGGC-----CCGGA------------UCCGGC- -5' |
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28743 | 5' | -64.9 | NC_006146.1 | + | 19939 | 0.66 | 0.540784 |
Target: 5'- aUCaaUCCGgcCUCCCUGGGCagaucaGGGCCGg -3' miRNA: 3'- -GGggAGGU--GAGGGGCCCGga----UCCGGC- -5' |
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28743 | 5' | -64.9 | NC_006146.1 | + | 19966 | 0.72 | 0.276387 |
Target: 5'- cCCCCUCagcuuguCUCCCCaccGGGUCcaucAGGCCGg -3' miRNA: 3'- -GGGGAGgu-----GAGGGG---CCCGGa---UCCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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