miRNA display CGI


Results 41 - 60 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28743 5' -64.9 NC_006146.1 + 18358 0.66 0.587481
Target:  5'- aCCCCUUUgguggcauGCUCaCCCuGGuCCUGguGGCCGg -3'
miRNA:   3'- -GGGGAGG--------UGAG-GGGcCC-GGAU--CCGGC- -5'
28743 5' -64.9 NC_006146.1 + 125229 0.66 0.591255
Target:  5'- gCCCUUCCGCUCCCUGgcggagacGGUCUcccuggauuuuaugaAGGaCCu -3'
miRNA:   3'- -GGGGAGGUGAGGGGC--------CCGGA---------------UCC-GGc -5'
28743 5' -64.9 NC_006146.1 + 1755 0.66 0.538018
Target:  5'- gCCCCUCCcgccggccauccccACgcgcggCCCCGGGCCcuccCCGa -3'
miRNA:   3'- -GGGGAGG--------------UGa-----GGGGCCCGGauccGGC- -5'
28743 5' -64.9 NC_006146.1 + 823 0.66 0.538018
Target:  5'- gCCCCUCCcgccggccauccccACgcgcggCCCCGGGCCcuccCCGa -3'
miRNA:   3'- -GGGGAGG--------------UGa-----GGGGCCCGGauccGGC- -5'
28743 5' -64.9 NC_006146.1 + 49698 0.66 0.578065
Target:  5'- cCUCCUCCACccUCUCCagGGGCCacggaauGCCGg -3'
miRNA:   3'- -GGGGAGGUG--AGGGG--CCCGGauc----CGGC- -5'
28743 5' -64.9 NC_006146.1 + 105828 0.66 0.559337
Target:  5'- gCCCCUCCug-CCCCGcGCC---GCCGa -3'
miRNA:   3'- -GGGGAGGugaGGGGCcCGGaucCGGC- -5'
28743 5' -64.9 NC_006146.1 + 82556 0.66 0.568682
Target:  5'- -gCCUCCuuuaACcCCCUGGGCCcaacGGCCu -3'
miRNA:   3'- ggGGAGG----UGaGGGGCCCGGau--CCGGc -5'
28743 5' -64.9 NC_006146.1 + 24261 0.66 0.559337
Target:  5'- aCCUUCCAgg-CCCGGGCCcccaggucucGGGCCa -3'
miRNA:   3'- gGGGAGGUgagGGGCCCGGa---------UCCGGc -5'
28743 5' -64.9 NC_006146.1 + 15027 0.66 0.559337
Target:  5'- aCCUUCCAgg-CCCGGGCCcccaggucucGGGCCa -3'
miRNA:   3'- gGGGAGGUgagGGGCCCGGa---------UCCGGc -5'
28743 5' -64.9 NC_006146.1 + 24678 0.66 0.553751
Target:  5'- -nCCUCCGCgUCCCCguccuccagagucacGGGCUacAGGCCc -3'
miRNA:   3'- ggGGAGGUG-AGGGG---------------CCCGGa-UCCGGc -5'
28743 5' -64.9 NC_006146.1 + 21600 0.66 0.553751
Target:  5'- -nCCUCCGCgUCCCCguccuccagagucacGGGCUacAGGCCc -3'
miRNA:   3'- ggGGAGGUG-AGGGG---------------CCCGGa-UCCGGc -5'
28743 5' -64.9 NC_006146.1 + 31442 0.66 0.550036
Target:  5'- cCUUCUCCAgUgcaggcacccCCCCGGGCaccguggGGGCCu -3'
miRNA:   3'- -GGGGAGGUgA----------GGGGCCCGga-----UCCGGc -5'
28743 5' -64.9 NC_006146.1 + 38352 0.66 0.550036
Target:  5'- -aUCUCaCGCUCcgaCCCGaGGCCUucgAGGCCa -3'
miRNA:   3'- ggGGAG-GUGAG---GGGC-CCGGA---UCCGGc -5'
28743 5' -64.9 NC_006146.1 + 56058 0.66 0.550036
Target:  5'- gCCCCUCCcgcgggaagGCgucCCaCCGGGCCaagUAGGUg- -3'
miRNA:   3'- -GGGGAGG---------UGa--GG-GGCCCGG---AUCCGgc -5'
28743 5' -64.9 NC_006146.1 + 133338 0.66 0.540784
Target:  5'- aCCCCUagCCAacaaguCUCUCCGGGUCUGcuuGCCu -3'
miRNA:   3'- -GGGGA--GGU------GAGGGGCCCGGAUc--CGGc -5'
28743 5' -64.9 NC_006146.1 + 136456 0.67 0.510648
Target:  5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3'
miRNA:   3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5'
28743 5' -64.9 NC_006146.1 + 33193 0.67 0.486523
Target:  5'- gCCCgggCAC-CCCCGGGgggAGGCCGg -3'
miRNA:   3'- gGGGag-GUGaGGGGCCCggaUCCGGC- -5'
28743 5' -64.9 NC_006146.1 + 136270 0.67 0.510648
Target:  5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3'
miRNA:   3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5'
28743 5' -64.9 NC_006146.1 + 13979 0.67 0.477725
Target:  5'- gCCCgucagcgCCGC-CaCCCaGGCCUcGGCCGg -3'
miRNA:   3'- gGGGa------GGUGaG-GGGcCCGGAuCCGGC- -5'
28743 5' -64.9 NC_006146.1 + 136549 0.67 0.510648
Target:  5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3'
miRNA:   3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.