miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28744 3' -56.9 NC_006146.1 + 92253 0.68 0.795957
Target:  5'- -uGGCugCUGCUgGGGGgCGGGCccgGCc -3'
miRNA:   3'- ucCCGugGAUGAgCUCC-GUCCGaa-UG- -5'
28744 3' -56.9 NC_006146.1 + 15046 0.66 0.854258
Target:  5'- cAGGGCccgccggGCCUGCgagGAGGCAcuGGCggggGCu -3'
miRNA:   3'- -UCCCG-------UGGAUGag-CUCCGU--CCGaa--UG- -5'
28744 3' -56.9 NC_006146.1 + 111342 0.67 0.83906
Target:  5'- uGGGCGCa-ACcCGAGGUGGGCa--- -3'
miRNA:   3'- uCCCGUGgaUGaGCUCCGUCCGaaug -5'
28744 3' -56.9 NC_006146.1 + 40025 0.67 0.830785
Target:  5'- cAGGGgGCCUGCUgGGGGCcguaGCcgACu -3'
miRNA:   3'- -UCCCgUGGAUGAgCUCCGuc--CGaaUG- -5'
28744 3' -56.9 NC_006146.1 + 114606 0.67 0.830785
Target:  5'- uGGGcCACC---UCGAGGCGGcGCUggACg -3'
miRNA:   3'- uCCC-GUGGaugAGCUCCGUC-CGAa-UG- -5'
28744 3' -56.9 NC_006146.1 + 122146 0.67 0.82233
Target:  5'- -cGGCGgCUGCUgGAGGCcGGGCg--- -3'
miRNA:   3'- ucCCGUgGAUGAgCUCCG-UCCGaaug -5'
28744 3' -56.9 NC_006146.1 + 92072 0.67 0.804907
Target:  5'- uGGGGCugCUGCUgGgGGGC-GGCccgGCc -3'
miRNA:   3'- -UCCCGugGAUGAgC-UCCGuCCGaa-UG- -5'
28744 3' -56.9 NC_006146.1 + 51816 0.68 0.795957
Target:  5'- gAGGGCgGCCUcCUCgggaagcgccgGAGGUGGGC-UGCg -3'
miRNA:   3'- -UCCCG-UGGAuGAG-----------CUCCGUCCGaAUG- -5'
28744 3' -56.9 NC_006146.1 + 75808 0.68 0.795957
Target:  5'- cGGGCGCCgccUUCGAGGCccugcGGGaCaUGCa -3'
miRNA:   3'- uCCCGUGGau-GAGCUCCG-----UCC-GaAUG- -5'
28744 3' -56.9 NC_006146.1 + 77894 0.66 0.855038
Target:  5'- cGGaGCACgCUGCUUaacaggcgcaGGGGCGGGCg--- -3'
miRNA:   3'- uCC-CGUG-GAUGAG----------CUCCGUCCGaaug -5'
28744 3' -56.9 NC_006146.1 + 61227 0.66 0.862727
Target:  5'- cGGGUACCggACUgCGAGGU-GGUcUGCu -3'
miRNA:   3'- uCCCGUGGa-UGA-GCUCCGuCCGaAUG- -5'
28744 3' -56.9 NC_006146.1 + 162649 0.66 0.862727
Target:  5'- gGGGGUgcauGCCccCUCGuAGGCAGuGCUUcACg -3'
miRNA:   3'- -UCCCG----UGGauGAGC-UCCGUC-CGAA-UG- -5'
28744 3' -56.9 NC_006146.1 + 153923 0.66 0.884525
Target:  5'- cGGGCGCCcuugcCUgGAGGCAGaGaCUggGCg -3'
miRNA:   3'- uCCCGUGGau---GAgCUCCGUC-C-GAa-UG- -5'
28744 3' -56.9 NC_006146.1 + 150845 0.66 0.884525
Target:  5'- cGGGCGCCcuugcCUgGAGGCAGaGaCUggGCg -3'
miRNA:   3'- uCCCGUGGau---GAgCUCCGUC-C-GAa-UG- -5'
28744 3' -56.9 NC_006146.1 + 147767 0.66 0.884525
Target:  5'- cGGGCGCCcuugcCUgGAGGCAGaGaCUggGCg -3'
miRNA:   3'- uCCCGUGGau---GAgCUCCGUC-C-GAa-UG- -5'
28744 3' -56.9 NC_006146.1 + 144690 0.66 0.884525
Target:  5'- cGGGCGCCcuugcCUgGAGGCgagacuGGGCggcUGCg -3'
miRNA:   3'- uCCCGUGGau---GAgCUCCG------UCCGa--AUG- -5'
28744 3' -56.9 NC_006146.1 + 141612 0.66 0.884525
Target:  5'- cGGGCGCCcuugcCUgGAGGCAGaGaCUggGCg -3'
miRNA:   3'- uCCCGUGGau---GAgCUCCGUC-C-GAa-UG- -5'
28744 3' -56.9 NC_006146.1 + 19763 0.66 0.881732
Target:  5'- uGGGCACCUGCgaagacauagagGGGGUugAGGUcUACg -3'
miRNA:   3'- uCCCGUGGAUGag----------CUCCG--UCCGaAUG- -5'
28744 3' -56.9 NC_006146.1 + 57274 0.66 0.877476
Target:  5'- gGGGGCGagacaacauCCaGCgcCGGGGCAGGCg--- -3'
miRNA:   3'- -UCCCGU---------GGaUGa-GCUCCGUCCGaaug -5'
28744 3' -56.9 NC_006146.1 + 92341 0.66 0.877476
Target:  5'- uGGGGCAgCUGauaUGGGGC-GGCUcGCa -3'
miRNA:   3'- -UCCCGUgGAUga-GCUCCGuCCGAaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.