miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28744 3' -56.9 NC_006146.1 + 25164 0.72 0.537396
Target:  5'- aGGaGGCGCCUGggCGAGGCuggguGGCUggGCa -3'
miRNA:   3'- -UC-CCGUGGAUgaGCUCCGu----CCGAa-UG- -5'
28744 3' -56.9 NC_006146.1 + 19008 0.72 0.537396
Target:  5'- aGGaGGCGCCUGggCGAGGCuggguGGCUggGCa -3'
miRNA:   3'- -UC-CCGUGGAUgaGCUCCGu----CCGAa-UG- -5'
28744 3' -56.9 NC_006146.1 + 15931 0.72 0.537396
Target:  5'- aGGaGGCGCCUGggCGAGGCuggguGGCUggGCa -3'
miRNA:   3'- -UC-CCGUGGAUgaGCUCCGu----CCGAa-UG- -5'
28744 3' -56.9 NC_006146.1 + 84945 0.72 0.567429
Target:  5'- cGGaGGCGCCUcGCUUGGGGgGGGCa--- -3'
miRNA:   3'- -UC-CCGUGGA-UGAGCUCCgUCCGaaug -5'
28744 3' -56.9 NC_006146.1 + 139168 0.72 0.567429
Target:  5'- gGGGGCGCCUG--UGAGGC-GGCUg-- -3'
miRNA:   3'- -UCCCGUGGAUgaGCUCCGuCCGAaug -5'
28744 3' -56.9 NC_006146.1 + 68157 0.71 0.618301
Target:  5'- aGGGGCuGCCUcCUCcccGGGCAGGCgcaGCg -3'
miRNA:   3'- -UCCCG-UGGAuGAGc--UCCGUCCGaa-UG- -5'
28744 3' -56.9 NC_006146.1 + 103392 0.71 0.618301
Target:  5'- uAGGGCGCCUGC-CaGuGGgGGGCgucgUGCu -3'
miRNA:   3'- -UCCCGUGGAUGaG-CuCCgUCCGa---AUG- -5'
28744 3' -56.9 NC_006146.1 + 16283 0.7 0.638774
Target:  5'- cGGGCGCCUcCUCGGguucagccgcuGGCuGGCUcUGCc -3'
miRNA:   3'- uCCCGUGGAuGAGCU-----------CCGuCCGA-AUG- -5'
28744 3' -56.9 NC_006146.1 + 123707 0.7 0.638774
Target:  5'- cAGGG-GCCUggcGCUCGGGGCGgcGGCggGCu -3'
miRNA:   3'- -UCCCgUGGA---UGAGCUCCGU--CCGaaUG- -5'
28744 3' -56.9 NC_006146.1 + 13205 0.7 0.638774
Target:  5'- cGGGCGCCUcCUCGGguucagccgcuGGCuGGCUcUGCc -3'
miRNA:   3'- uCCCGUGGAuGAGCU-----------CCGuCCGA-AUG- -5'
28744 3' -56.9 NC_006146.1 + 19361 0.7 0.638774
Target:  5'- cGGGCGCCUcCUCGGguucagccgcuGGCuGGCUcUGCc -3'
miRNA:   3'- uCCCGUGGAuGAGCU-----------CCGuCCGA-AUG- -5'
28744 3' -56.9 NC_006146.1 + 22439 0.7 0.638774
Target:  5'- cGGGCGCCUcCUCGGguucagccgcuGGCuGGCUcUGCc -3'
miRNA:   3'- uCCCGUGGAuGAGCU-----------CCGuCCGA-AUG- -5'
28744 3' -56.9 NC_006146.1 + 28595 0.7 0.638774
Target:  5'- cGGGCGCCUcCUCGGguucagccgcuGGCuGGCUcUGCc -3'
miRNA:   3'- uCCCGUGGAuGAGCU-----------CCGuCCGA-AUG- -5'
28744 3' -56.9 NC_006146.1 + 25517 0.7 0.638774
Target:  5'- cGGGCGCCUcCUCGGguucagccgcuGGCuGGCUcUGCc -3'
miRNA:   3'- uCCCGUGGAuGAGCU-----------CCGuCCGA-AUG- -5'
28744 3' -56.9 NC_006146.1 + 110865 0.7 0.649007
Target:  5'- gAGGGaCGCUgcgucucggGCUCGGGcGCAGGCggggACg -3'
miRNA:   3'- -UCCC-GUGGa--------UGAGCUC-CGUCCGaa--UG- -5'
28744 3' -56.9 NC_006146.1 + 47078 0.7 0.659226
Target:  5'- gGGGGCGCCUgACgaaGAcGGUGGGC-UGCg -3'
miRNA:   3'- -UCCCGUGGA-UGag-CU-CCGUCCGaAUG- -5'
28744 3' -56.9 NC_006146.1 + 12852 0.7 0.659226
Target:  5'- aGGaGGCGCCUGgggCGAGGCuggguGGCUggGCa -3'
miRNA:   3'- -UC-CCGUGGAUga-GCUCCGu----CCGAa-UG- -5'
28744 3' -56.9 NC_006146.1 + 20127 0.69 0.699798
Target:  5'- -cGGCACCUGCUgGGGGCcaaaaaggAGGacgUGCa -3'
miRNA:   3'- ucCCGUGGAUGAgCUCCG--------UCCga-AUG- -5'
28744 3' -56.9 NC_006146.1 + 72564 0.69 0.729661
Target:  5'- uGGGCGCCgg--CGuGGUgcugGGGCUUGCc -3'
miRNA:   3'- uCCCGUGGaugaGCuCCG----UCCGAAUG- -5'
28744 3' -56.9 NC_006146.1 + 40741 0.69 0.729661
Target:  5'- cGGGC-CCgUGCUUGGGGCuGGCcacggACg -3'
miRNA:   3'- uCCCGuGG-AUGAGCUCCGuCCGaa---UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.