miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28744 3' -56.9 NC_006146.1 + 16283 0.7 0.638774
Target:  5'- cGGGCGCCUcCUCGGguucagccgcuGGCuGGCUcUGCc -3'
miRNA:   3'- uCCCGUGGAuGAGCU-----------CCGuCCGA-AUG- -5'
28744 3' -56.9 NC_006146.1 + 19008 0.72 0.537396
Target:  5'- aGGaGGCGCCUGggCGAGGCuggguGGCUggGCa -3'
miRNA:   3'- -UC-CCGUGGAUgaGCUCCGu----CCGAa-UG- -5'
28744 3' -56.9 NC_006146.1 + 30367 0.66 0.847147
Target:  5'- uGGGGUGCCguccCUCccaGGGCuAGGUUUGCu -3'
miRNA:   3'- -UCCCGUGGau--GAGc--UCCG-UCCGAAUG- -5'
28744 3' -56.9 NC_006146.1 + 40741 0.69 0.729661
Target:  5'- cGGGC-CCgUGCUUGGGGCuGGCcacggACg -3'
miRNA:   3'- uCCCGuGG-AUGAGCUCCGuCCGaa---UG- -5'
28744 3' -56.9 NC_006146.1 + 15931 0.72 0.537396
Target:  5'- aGGaGGCGCCUGggCGAGGCuggguGGCUggGCa -3'
miRNA:   3'- -UC-CCGUGGAUgaGCUCCGu----CCGAa-UG- -5'
28744 3' -56.9 NC_006146.1 + 3981 0.67 0.83906
Target:  5'- gAGGGCACCaaguggccaUGgUCGAGGCGcugaugaacgcGGCcuUUGCc -3'
miRNA:   3'- -UCCCGUGG---------AUgAGCUCCGU-----------CCG--AAUG- -5'
28744 3' -56.9 NC_006146.1 + 137828 0.74 0.441214
Target:  5'- cGGuGCACCUggaaggcagggggGCUCGGGGUGGGUggGCg -3'
miRNA:   3'- uCC-CGUGGA-------------UGAGCUCCGUCCGaaUG- -5'
28744 3' -56.9 NC_006146.1 + 33998 0.75 0.393098
Target:  5'- cGGuGCACCUggaaggcagggggggGgUCGGGGCAGGCggGCg -3'
miRNA:   3'- uCC-CGUGGA---------------UgAGCUCCGUCCGaaUG- -5'
28744 3' -56.9 NC_006146.1 + 72564 0.69 0.729661
Target:  5'- uGGGCGCCgg--CGuGGUgcugGGGCUUGCc -3'
miRNA:   3'- uCCCGUGGaugaGCuCCG----UCCGAAUG- -5'
28744 3' -56.9 NC_006146.1 + 169173 0.66 0.847147
Target:  5'- -cGGCGCCUGCagggGGGGCcGGCgggGCg -3'
miRNA:   3'- ucCCGUGGAUGag--CUCCGuCCGaa-UG- -5'
28744 3' -56.9 NC_006146.1 + 139168 0.72 0.567429
Target:  5'- gGGGGCGCCUG--UGAGGC-GGCUg-- -3'
miRNA:   3'- -UCCCGUGGAUgaGCUCCGuCCGAaug -5'
28744 3' -56.9 NC_006146.1 + 22086 0.72 0.537396
Target:  5'- aGGaGGCGCCUGggCGAGGCuggguGGCUggGCa -3'
miRNA:   3'- -UC-CCGUGGAUgaGCUCCGu----CCGAa-UG- -5'
28744 3' -56.9 NC_006146.1 + 90649 0.68 0.795957
Target:  5'- gGGaGGCGCCgcggCGAGGguGGCa--- -3'
miRNA:   3'- -UC-CCGUGGaugaGCUCCguCCGaaug -5'
28744 3' -56.9 NC_006146.1 + 58107 0.66 0.847147
Target:  5'- uGGGGCGCa-ACggGAGGCAGGagaGCg -3'
miRNA:   3'- -UCCCGUGgaUGagCUCCGUCCgaaUG- -5'
28744 3' -56.9 NC_006146.1 + 40025 0.67 0.830785
Target:  5'- cAGGGgGCCUGCUgGGGGCcguaGCcgACu -3'
miRNA:   3'- -UCCCgUGGAUGAgCUCCGuc--CGaaUG- -5'
28744 3' -56.9 NC_006146.1 + 111342 0.67 0.83906
Target:  5'- uGGGCGCa-ACcCGAGGUGGGCa--- -3'
miRNA:   3'- uCCCGUGgaUGaGCUCCGUCCGaaug -5'
28744 3' -56.9 NC_006146.1 + 88912 0.69 0.739459
Target:  5'- uAGGGCACUgggGCUCuuguGGCugAGGCUgagGCu -3'
miRNA:   3'- -UCCCGUGGa--UGAGcu--CCG--UCCGAa--UG- -5'
28744 3' -56.9 NC_006146.1 + 19763 0.66 0.881732
Target:  5'- uGGGCACCUGCgaagacauagagGGGGUugAGGUcUACg -3'
miRNA:   3'- uCCCGUGGAUGag----------CUCCG--UCCGaAUG- -5'
28744 3' -56.9 NC_006146.1 + 95537 0.69 0.739459
Target:  5'- uGGGGC-CCaGCUUGGGGCAGcGUaugACa -3'
miRNA:   3'- -UCCCGuGGaUGAGCUCCGUC-CGaa-UG- -5'
28744 3' -56.9 NC_006146.1 + 85306 0.69 0.739459
Target:  5'- -cGGUGCCaGCUucCGAGGCGGGCggcUGCc -3'
miRNA:   3'- ucCCGUGGaUGA--GCUCCGUCCGa--AUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.