miRNA display CGI


Results 41 - 60 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28744 3' -56.9 NC_006146.1 + 19763 0.66 0.881732
Target:  5'- uGGGCACCUGCgaagacauagagGGGGUugAGGUcUACg -3'
miRNA:   3'- uCCCGUGGAUGag----------CUCCG--UCCGaAUG- -5'
28744 3' -56.9 NC_006146.1 + 150845 0.66 0.884525
Target:  5'- cGGGCGCCcuugcCUgGAGGCAGaGaCUggGCg -3'
miRNA:   3'- uCCCGUGGau---GAgCUCCGUC-C-GAa-UG- -5'
28744 3' -56.9 NC_006146.1 + 141612 0.66 0.884525
Target:  5'- cGGGCGCCcuugcCUgGAGGCAGaGaCUggGCg -3'
miRNA:   3'- uCCCGUGGau---GAgCUCCGUC-C-GAa-UG- -5'
28744 3' -56.9 NC_006146.1 + 92012 0.76 0.34158
Target:  5'- uGGGGCugCUGCUgGGGGgCGGGCccgGCc -3'
miRNA:   3'- -UCCCGugGAUGAgCUCC-GUCCGaa-UG- -5'
28744 3' -56.9 NC_006146.1 + 92042 0.76 0.34158
Target:  5'- uGGGGCugCUGCUgGGGGgCGGGCccgGCc -3'
miRNA:   3'- -UCCCGugGAUGAgCUCC-GUCCGaa-UG- -5'
28744 3' -56.9 NC_006146.1 + 15926 0.68 0.777621
Target:  5'- cGGGC-CCUGCgCGAGGCcGuGCUgACc -3'
miRNA:   3'- uCCCGuGGAUGaGCUCCGuC-CGAaUG- -5'
28744 3' -56.9 NC_006146.1 + 86543 0.68 0.768254
Target:  5'- aGGGGCAgCUggGCUUGAGGggcagcUGGGCUUGa -3'
miRNA:   3'- -UCCCGUgGA--UGAGCUCC------GUCCGAAUg -5'
28744 3' -56.9 NC_006146.1 + 86509 0.68 0.768254
Target:  5'- aGGGGCAgCUggGCUUGAGGggcaacUGGGCUUGa -3'
miRNA:   3'- -UCCCGUgGA--UGAGCUCC------GUCCGAAUg -5'
28744 3' -56.9 NC_006146.1 + 20963 0.68 0.749163
Target:  5'- uGGGCGCCccucaACccCGAgGGCAGGC-UACg -3'
miRNA:   3'- uCCCGUGGa----UGa-GCU-CCGUCCGaAUG- -5'
28744 3' -56.9 NC_006146.1 + 95537 0.69 0.739459
Target:  5'- uGGGGC-CCaGCUUGGGGCAGcGUaugACa -3'
miRNA:   3'- -UCCCGuGGaUGAGCUCCGUC-CGaa-UG- -5'
28744 3' -56.9 NC_006146.1 + 85306 0.69 0.739459
Target:  5'- -cGGUGCCaGCUucCGAGGCGGGCggcUGCc -3'
miRNA:   3'- ucCCGUGGaUGA--GCUCCGUCCGa--AUG- -5'
28744 3' -56.9 NC_006146.1 + 88912 0.69 0.739459
Target:  5'- uAGGGCACUgggGCUCuuguGGCugAGGCUgagGCu -3'
miRNA:   3'- -UCCCGUGGa--UGAGcu--CCG--UCCGAa--UG- -5'
28744 3' -56.9 NC_006146.1 + 40025 0.67 0.830785
Target:  5'- cAGGGgGCCUGCUgGGGGCcguaGCcgACu -3'
miRNA:   3'- -UCCCgUGGAUGAgCUCCGuc--CGaaUG- -5'
28744 3' -56.9 NC_006146.1 + 111342 0.67 0.83906
Target:  5'- uGGGCGCa-ACcCGAGGUGGGCa--- -3'
miRNA:   3'- uCCCGUGgaUGaGCUCCGUCCGaaug -5'
28744 3' -56.9 NC_006146.1 + 86577 0.68 0.768254
Target:  5'- aGGGGCAgCUggGCUUGAGGggcagcUGGGCUUGa -3'
miRNA:   3'- -UCCCGUgGA--UGAGCUCC------GUCCGAAUg -5'
28744 3' -56.9 NC_006146.1 + 15046 0.66 0.854258
Target:  5'- cAGGGCccgccggGCCUGCgagGAGGCAcuGGCggggGCu -3'
miRNA:   3'- -UCCCG-------UGGAUGag-CUCCGU--CCGaa--UG- -5'
28744 3' -56.9 NC_006146.1 + 77894 0.66 0.855038
Target:  5'- cGGaGCACgCUGCUUaacaggcgcaGGGGCGGGCg--- -3'
miRNA:   3'- uCC-CGUG-GAUGAG----------CUCCGUCCGaaug -5'
28744 3' -56.9 NC_006146.1 + 61227 0.66 0.862727
Target:  5'- cGGGUACCggACUgCGAGGU-GGUcUGCu -3'
miRNA:   3'- uCCCGUGGa-UGA-GCUCCGuCCGaAUG- -5'
28744 3' -56.9 NC_006146.1 + 115577 0.68 0.786859
Target:  5'- -cGGC-CCUACUCGAGaGCcugucAGGCUUcGCc -3'
miRNA:   3'- ucCCGuGGAUGAGCUC-CG-----UCCGAA-UG- -5'
28744 3' -56.9 NC_006146.1 + 92101 0.76 0.34158
Target:  5'- uGGGGCugCUGCUgGGGGgCGGGCccgGCc -3'
miRNA:   3'- -UCCCGugGAUGAgCUCC-GUCCGaa-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.