Results 41 - 60 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28744 | 3' | -56.9 | NC_006146.1 | + | 85306 | 0.69 | 0.739459 |
Target: 5'- -cGGUGCCaGCUucCGAGGCGGGCggcUGCc -3' miRNA: 3'- ucCCGUGGaUGA--GCUCCGUCCGa--AUG- -5' |
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28744 | 3' | -56.9 | NC_006146.1 | + | 86509 | 0.68 | 0.768254 |
Target: 5'- aGGGGCAgCUggGCUUGAGGggcaacUGGGCUUGa -3' miRNA: 3'- -UCCCGUgGA--UGAGCUCC------GUCCGAAUg -5' |
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28744 | 3' | -56.9 | NC_006146.1 | + | 86543 | 0.68 | 0.768254 |
Target: 5'- aGGGGCAgCUggGCUUGAGGggcagcUGGGCUUGa -3' miRNA: 3'- -UCCCGUgGA--UGAGCUCC------GUCCGAAUg -5' |
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28744 | 3' | -56.9 | NC_006146.1 | + | 86577 | 0.68 | 0.768254 |
Target: 5'- aGGGGCAgCUggGCUUGAGGggcagcUGGGCUUGa -3' miRNA: 3'- -UCCCGUgGA--UGAGCUCC------GUCCGAAUg -5' |
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28744 | 3' | -56.9 | NC_006146.1 | + | 88912 | 0.69 | 0.739459 |
Target: 5'- uAGGGCACUgggGCUCuuguGGCugAGGCUgagGCu -3' miRNA: 3'- -UCCCGUGGa--UGAGcu--CCG--UCCGAa--UG- -5' |
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28744 | 3' | -56.9 | NC_006146.1 | + | 90649 | 0.68 | 0.795957 |
Target: 5'- gGGaGGCGCCgcggCGAGGguGGCa--- -3' miRNA: 3'- -UC-CCGUGGaugaGCUCCguCCGaaug -5' |
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28744 | 3' | -56.9 | NC_006146.1 | + | 92012 | 0.76 | 0.34158 |
Target: 5'- uGGGGCugCUGCUgGGGGgCGGGCccgGCc -3' miRNA: 3'- -UCCCGugGAUGAgCUCC-GUCCGaa-UG- -5' |
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28744 | 3' | -56.9 | NC_006146.1 | + | 92042 | 0.76 | 0.34158 |
Target: 5'- uGGGGCugCUGCUgGGGGgCGGGCccgGCc -3' miRNA: 3'- -UCCCGugGAUGAgCUCC-GUCCGaa-UG- -5' |
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28744 | 3' | -56.9 | NC_006146.1 | + | 92072 | 0.67 | 0.804907 |
Target: 5'- uGGGGCugCUGCUgGgGGGC-GGCccgGCc -3' miRNA: 3'- -UCCCGugGAUGAgC-UCCGuCCGaa-UG- -5' |
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28744 | 3' | -56.9 | NC_006146.1 | + | 92101 | 0.76 | 0.34158 |
Target: 5'- uGGGGCugCUGCUgGGGGgCGGGCccgGCc -3' miRNA: 3'- -UCCCGugGAUGAgCUCC-GUCCGaa-UG- -5' |
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28744 | 3' | -56.9 | NC_006146.1 | + | 92131 | 0.76 | 0.34158 |
Target: 5'- uGGGGCugCUGCUgGGGGgCGGGCccgGCc -3' miRNA: 3'- -UCCCGugGAUGAgCUCC-GUCCGaa-UG- -5' |
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28744 | 3' | -56.9 | NC_006146.1 | + | 92161 | 0.76 | 0.34158 |
Target: 5'- uGGGGCugCUGCUgGGGGgCGGGCccgGCc -3' miRNA: 3'- -UCCCGugGAUGAgCUCC-GUCCGaa-UG- -5' |
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28744 | 3' | -56.9 | NC_006146.1 | + | 92191 | 0.76 | 0.34158 |
Target: 5'- uGGGGCugCUGCUgGGGGgCGGGCccgGCc -3' miRNA: 3'- -UCCCGugGAUGAgCUCC-GUCCGaa-UG- -5' |
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28744 | 3' | -56.9 | NC_006146.1 | + | 92221 | 0.76 | 0.34158 |
Target: 5'- uGGGGCugCUGCUgGGGGgCGGGCccgGCc -3' miRNA: 3'- -UCCCGugGAUGAgCUCC-GUCCGaa-UG- -5' |
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28744 | 3' | -56.9 | NC_006146.1 | + | 92253 | 0.68 | 0.795957 |
Target: 5'- -uGGCugCUGCUgGGGGgCGGGCccgGCc -3' miRNA: 3'- ucCCGugGAUGAgCUCC-GUCCGaa-UG- -5' |
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28744 | 3' | -56.9 | NC_006146.1 | + | 92281 | 0.76 | 0.34158 |
Target: 5'- uGGGGCugCUGCUgGGGGgCGGGCccgGCc -3' miRNA: 3'- -UCCCGugGAUGAgCUCC-GUCCGaa-UG- -5' |
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28744 | 3' | -56.9 | NC_006146.1 | + | 92311 | 0.76 | 0.34158 |
Target: 5'- uGGGGCugCUGCUgGGGGgCGGGCccgGCc -3' miRNA: 3'- -UCCCGugGAUGAgCUCC-GUCCGaa-UG- -5' |
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28744 | 3' | -56.9 | NC_006146.1 | + | 92341 | 0.66 | 0.877476 |
Target: 5'- uGGGGCAgCUGauaUGGGGC-GGCUcGCa -3' miRNA: 3'- -UCCCGUgGAUga-GCUCCGuCCGAaUG- -5' |
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28744 | 3' | -56.9 | NC_006146.1 | + | 95537 | 0.69 | 0.739459 |
Target: 5'- uGGGGC-CCaGCUUGGGGCAGcGUaugACa -3' miRNA: 3'- -UCCCGuGGaUGAGCUCCGUC-CGaa-UG- -5' |
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28744 | 3' | -56.9 | NC_006146.1 | + | 103392 | 0.71 | 0.618301 |
Target: 5'- uAGGGCGCCUGC-CaGuGGgGGGCgucgUGCu -3' miRNA: 3'- -UCCCGUGGAUGaG-CuCCgUCCGa---AUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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