miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28744 5' -59.9 NC_006146.1 + 157750 0.67 0.690129
Target:  5'- gGGUcuuGGGCCugggAGGUCCGGGGuGUUgaGCCUg -3'
miRNA:   3'- aCCA---UUCGG----UCCGGGCUCC-CAG--UGGA- -5'
28744 5' -59.9 NC_006146.1 + 44777 0.66 0.738566
Target:  5'- gGGUGccguGCCGGGCUCaGGGGGgCGCa- -3'
miRNA:   3'- aCCAUu---CGGUCCGGG-CUCCCaGUGga -5'
28744 5' -59.9 NC_006146.1 + 41099 0.67 0.723254
Target:  5'- aGGgGAGCCAGGCgUGcagggccuccacuuuAGGGUC-CCg -3'
miRNA:   3'- aCCaUUCGGUCCGgGC---------------UCCCAGuGGa -5'
28744 5' -59.9 NC_006146.1 + 104222 0.67 0.719396
Target:  5'- cGGggAAGCUGGGCUUccGGGUCAUCa -3'
miRNA:   3'- aCCa-UUCGGUCCGGGcuCCCAGUGGa -5'
28744 5' -59.9 NC_006146.1 + 128876 0.67 0.713586
Target:  5'- gGcGUGAGcCCGGGCCCaGAGGGaguagcucggcaacgUCACg- -3'
miRNA:   3'- aC-CAUUC-GGUCCGGG-CUCCC---------------AGUGga -5'
28744 5' -59.9 NC_006146.1 + 42381 0.67 0.7097
Target:  5'- gGGUGGGCgAGgggcGCCCcAGGGcCACCc -3'
miRNA:   3'- aCCAUUCGgUC----CGGGcUCCCaGUGGa -5'
28744 5' -59.9 NC_006146.1 + 14811 0.67 0.7097
Target:  5'- aGGccGGCCGGGCCgGAGGaGggCACg- -3'
miRNA:   3'- aCCauUCGGUCCGGgCUCC-Ca-GUGga -5'
28744 5' -59.9 NC_006146.1 + 59839 0.67 0.703852
Target:  5'- cGGUGcGGCuCAGGCUCccgugacucagggagGAGGuGUCGCCa -3'
miRNA:   3'- aCCAU-UCG-GUCCGGG---------------CUCC-CAGUGGa -5'
28744 5' -59.9 NC_006146.1 + 92087 0.67 0.690129
Target:  5'- gGGgcGGCCcGGCCUGGGGcugCugCUg -3'
miRNA:   3'- aCCauUCGGuCCGGGCUCCca-GugGA- -5'
28744 5' -59.9 NC_006146.1 + 129245 0.66 0.738566
Target:  5'- cGGgcccAGGUgAGGCgCGAGGGUCAg-- -3'
miRNA:   3'- aCCa---UUCGgUCCGgGCUCCCAGUgga -5'
28744 5' -59.9 NC_006146.1 + 128815 0.66 0.748023
Target:  5'- aGGgagGGGCgGcGGCagaGGGGGUCACCc -3'
miRNA:   3'- aCCa--UUCGgU-CCGgg-CUCCCAGUGGa -5'
28744 5' -59.9 NC_006146.1 + 94972 0.66 0.748023
Target:  5'- cUGGUAuaaagacccacuGGCCAGGCauGGGGGgCAgCUg -3'
miRNA:   3'- -ACCAU------------UCGGUCCGggCUCCCaGUgGA- -5'
28744 5' -59.9 NC_006146.1 + 91997 0.66 0.775783
Target:  5'- cUGGcGGGCCcGGCCUGGGGcugCugCUg -3'
miRNA:   3'- -ACCaUUCGGuCCGGGCUCCca-GugGA- -5'
28744 5' -59.9 NC_006146.1 + 52992 0.66 0.76664
Target:  5'- cGGaccugccGGCCGuGGCCgCGGGGGUCgaugACCa -3'
miRNA:   3'- aCCau-----UCGGU-CCGG-GCUCCCAG----UGGa -5'
28744 5' -59.9 NC_006146.1 + 61524 0.66 0.76664
Target:  5'- aGGgaGGCCuccGGuGUCCGGGGGaCGCCc -3'
miRNA:   3'- aCCauUCGG---UC-CGGGCUCCCaGUGGa -5'
28744 5' -59.9 NC_006146.1 + 51571 0.66 0.757384
Target:  5'- cUGGgc-GCCgccgggagGGGCCCGGGGGa-GCCa -3'
miRNA:   3'- -ACCauuCGG--------UCCGGGCUCCCagUGGa -5'
28744 5' -59.9 NC_006146.1 + 55816 0.66 0.757384
Target:  5'- aUGaGUAcAGCCAGcGCCUGGGuGGgCACCc -3'
miRNA:   3'- -AC-CAU-UCGGUC-CGGGCUC-CCaGUGGa -5'
28744 5' -59.9 NC_006146.1 + 88812 0.66 0.748023
Target:  5'- cUGGgcauguuuGGCUGGGCCUGAGGcUC-CCUg -3'
miRNA:   3'- -ACCau------UCGGUCCGGGCUCCcAGuGGA- -5'
28744 5' -59.9 NC_006146.1 + 166364 0.66 0.748023
Target:  5'- aGGUAGucggcggcuGCC-GGCaCCGAGauGGUCACCc -3'
miRNA:   3'- aCCAUU---------CGGuCCG-GGCUC--CCAGUGGa -5'
28744 5' -59.9 NC_006146.1 + 117979 0.66 0.748023
Target:  5'- cGGacgAGGCCAGcGCCCccgGGGGGcCACg- -3'
miRNA:   3'- aCCa--UUCGGUC-CGGG---CUCCCaGUGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.