miRNA display CGI


Results 41 - 60 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28744 5' -59.9 NC_006146.1 + 52992 0.66 0.76664
Target:  5'- cGGaccugccGGCCGuGGCCgCGGGGGUCgaugACCa -3'
miRNA:   3'- aCCau-----UCGGU-CCGG-GCUCCCAG----UGGa -5'
28744 5' -59.9 NC_006146.1 + 91997 0.66 0.775783
Target:  5'- cUGGcGGGCCcGGCCUGGGGcugCugCUg -3'
miRNA:   3'- -ACCaUUCGGuCCGGGCUCCca-GugGA- -5'
28744 5' -59.9 NC_006146.1 + 159521 0.66 0.77669
Target:  5'- gGGgccaauGGCCucgaguuuuuucauuGGCCCGAGGGcuUCGCUc -3'
miRNA:   3'- aCCau----UCGGu--------------CCGGGCUCCC--AGUGGa -5'
28744 5' -59.9 NC_006146.1 + 41099 0.67 0.723254
Target:  5'- aGGgGAGCCAGGCgUGcagggccuccacuuuAGGGUC-CCg -3'
miRNA:   3'- aCCaUUCGGUCCGgGC---------------UCCCAGuGGa -5'
28744 5' -59.9 NC_006146.1 + 104222 0.67 0.719396
Target:  5'- cGGggAAGCUGGGCUUccGGGUCAUCa -3'
miRNA:   3'- aCCa-UUCGGUCCGGGcuCCCAGUGGa -5'
28744 5' -59.9 NC_006146.1 + 112511 0.68 0.620612
Target:  5'- cGGUccagGGGCCgguggaGGGCCU--GGGUCACCUc -3'
miRNA:   3'- aCCA----UUCGG------UCCGGGcuCCCAGUGGA- -5'
28744 5' -59.9 NC_006146.1 + 116395 0.68 0.620612
Target:  5'- aGGaggGAGCgGGGCCCuGGGGaGUCuCCUc -3'
miRNA:   3'- aCCa--UUCGgUCCGGG-CUCC-CAGuGGA- -5'
28744 5' -59.9 NC_006146.1 + 86454 0.67 0.670376
Target:  5'- gGGgcAGCUGGGCuUUGAGGGggcaGCCUg -3'
miRNA:   3'- aCCauUCGGUCCG-GGCUCCCag--UGGA- -5'
28744 5' -59.9 NC_006146.1 + 142361 0.67 0.690129
Target:  5'- gGGUcuuGGGCCugggAGGUCCGGGGuGUUgaGCCUg -3'
miRNA:   3'- aCCA---UUCGG----UCCGGGCUCC-CAG--UGGA- -5'
28744 5' -59.9 NC_006146.1 + 145439 0.67 0.690129
Target:  5'- gGGUcuuGGGCCugggAGGUCCGGGGuGUUgaGCCUg -3'
miRNA:   3'- aCCA---UUCGG----UCCGGGCUCC-CAG--UGGA- -5'
28744 5' -59.9 NC_006146.1 + 148517 0.67 0.690129
Target:  5'- gGGUcuuGGGCCugggAGGUCCGGGGuGUUgaGCCUg -3'
miRNA:   3'- aCCA---UUCGG----UCCGGGCUCC-CAG--UGGA- -5'
28744 5' -59.9 NC_006146.1 + 151595 0.67 0.690129
Target:  5'- gGGUcuuGGGCCugggAGGUCCGGGGuGUUgaGCCUg -3'
miRNA:   3'- aCCA---UUCGG----UCCGGGCUCC-CAG--UGGA- -5'
28744 5' -59.9 NC_006146.1 + 157750 0.67 0.690129
Target:  5'- gGGUcuuGGGCCugggAGGUCCGGGGuGUUgaGCCUg -3'
miRNA:   3'- aCCA---UUCGG----UCCGGGCUCC-CAG--UGGA- -5'
28744 5' -59.9 NC_006146.1 + 92087 0.67 0.690129
Target:  5'- gGGgcGGCCcGGCCUGGGGcugCugCUg -3'
miRNA:   3'- aCCauUCGGuCCGGGCUCCca-GugGA- -5'
28744 5' -59.9 NC_006146.1 + 59839 0.67 0.703852
Target:  5'- cGGUGcGGCuCAGGCUCccgugacucagggagGAGGuGUCGCCa -3'
miRNA:   3'- aCCAU-UCG-GUCCGGG---------------CUCC-CAGUGGa -5'
28744 5' -59.9 NC_006146.1 + 14811 0.67 0.7097
Target:  5'- aGGccGGCCGGGCCgGAGGaGggCACg- -3'
miRNA:   3'- aCCauUCGGUCCGGgCUCC-Ca-GUGga -5'
28744 5' -59.9 NC_006146.1 + 42381 0.67 0.7097
Target:  5'- gGGUGGGCgAGgggcGCCCcAGGGcCACCc -3'
miRNA:   3'- aCCAUUCGgUC----CGGGcUCCCaGUGGa -5'
28744 5' -59.9 NC_006146.1 + 128876 0.67 0.713586
Target:  5'- gGcGUGAGcCCGGGCCCaGAGGGaguagcucggcaacgUCACg- -3'
miRNA:   3'- aC-CAUUC-GGUCCGGG-CUCCC---------------AGUGga -5'
28744 5' -59.9 NC_006146.1 + 28372 0.66 0.775783
Target:  5'- aGaGUcGGCCuAGGCCCGgggaguggagGGGGaUCGCCc -3'
miRNA:   3'- aC-CAuUCGG-UCCGGGC----------UCCC-AGUGGa -5'
28744 5' -59.9 NC_006146.1 + 33781 0.74 0.325081
Target:  5'- gGGUGGGCguGGUCCGAuGGGUCcgcggguuuggugcACCUg -3'
miRNA:   3'- aCCAUUCGguCCGGGCU-CCCAG--------------UGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.