miRNA display CGI


Results 41 - 60 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28744 5' -59.9 NC_006146.1 + 50531 0.67 0.670376
Target:  5'- aGGUcagGAGCCgcuccAGGuCCCGGGuGGgCACCUg -3'
miRNA:   3'- aCCA---UUCGG-----UCC-GGGCUC-CCaGUGGA- -5'
28744 5' -59.9 NC_006146.1 + 33749 0.69 0.590792
Target:  5'- cGGUGGGUguGGUCCGcuGGGUcCGCUg -3'
miRNA:   3'- aCCAUUCGguCCGGGCu-CCCA-GUGGa -5'
28744 5' -59.9 NC_006146.1 + 116097 0.72 0.388786
Target:  5'- aUGGUGgcGGCCA--CCCGAGGGUCcCCg -3'
miRNA:   3'- -ACCAU--UCGGUccGGGCUCCCAGuGGa -5'
28744 5' -59.9 NC_006146.1 + 145127 0.67 0.670376
Target:  5'- aGGccUGGGCCAGGCUCuGGccGGUCACUa -3'
miRNA:   3'- aCC--AUUCGGUCCGGGcUC--CCAGUGGa -5'
28744 5' -59.9 NC_006146.1 + 33603 0.73 0.364838
Target:  5'- gGGUGGGCguGGUCCGcGGGUucggugCACCUg -3'
miRNA:   3'- aCCAUUCGguCCGGGCuCCCA------GUGGA- -5'
28744 5' -59.9 NC_006146.1 + 159894 0.66 0.738566
Target:  5'- aGGgccucgAGGCCgGGGCCCucgaagauGGGGGgCACCa -3'
miRNA:   3'- aCCa-----UUCGG-UCCGGG--------CUCCCaGUGGa -5'
28744 5' -59.9 NC_006146.1 + 46905 0.71 0.457446
Target:  5'- aGcGUAGGCCGGGUUgaGGGGGUCGCa- -3'
miRNA:   3'- aC-CAUUCGGUCCGGg-CUCCCAGUGga -5'
28744 5' -59.9 NC_006146.1 + 155789 0.66 0.72902
Target:  5'- ---aGAGCCGcucgguGGCCCuGGGGGcCACCg -3'
miRNA:   3'- accaUUCGGU------CCGGG-CUCCCaGUGGa -5'
28744 5' -59.9 NC_006146.1 + 34405 0.66 0.72902
Target:  5'- aGGUGuGUCAuuuuaGCCCGuuGGGUUACCUg -3'
miRNA:   3'- aCCAUuCGGUc----CGGGCu-CCCAGUGGA- -5'
28744 5' -59.9 NC_006146.1 + 18993 0.67 0.719396
Target:  5'- cGGc-GGCCGGaCCCGAGGaGgCGCCUg -3'
miRNA:   3'- aCCauUCGGUCcGGGCUCC-CaGUGGA- -5'
28744 5' -59.9 NC_006146.1 + 110591 0.67 0.719396
Target:  5'- cGGUccGGGUCAGGUCgGuGGGGUC-CCa -3'
miRNA:   3'- aCCA--UUCGGUCCGGgC-UCCCAGuGGa -5'
28744 5' -59.9 NC_006146.1 + 168231 0.67 0.7097
Target:  5'- cGGgagGGGCCGGcGCCUGcAGGGgggGCCg -3'
miRNA:   3'- aCCa--UUCGGUC-CGGGC-UCCCag-UGGa -5'
28744 5' -59.9 NC_006146.1 + 56393 0.67 0.699942
Target:  5'- gGGUAAGCguGGCCgcucgCGAGGGUgAg-- -3'
miRNA:   3'- aCCAUUCGguCCGG-----GCUCCCAgUgga -5'
28744 5' -59.9 NC_006146.1 + 28271 0.68 0.649509
Target:  5'- gGGcAGGCCGGGUCUcgggucuGGGGGUCugUg -3'
miRNA:   3'- aCCaUUCGGUCCGGG-------CUCCCAGugGa -5'
28744 5' -59.9 NC_006146.1 + 19037 0.68 0.649509
Target:  5'- gGGcAGGCCGGGUCUcgggucuGGGGGUCugUg -3'
miRNA:   3'- aCCaUUCGGUCCGGG-------CUCCCAGugGa -5'
28744 5' -59.9 NC_006146.1 + 168113 0.68 0.640544
Target:  5'- cGGgaGGCCGGcgcgcGCCCG-GGGUC-CCg -3'
miRNA:   3'- aCCauUCGGUC-----CGGGCuCCCAGuGGa -5'
28744 5' -59.9 NC_006146.1 + 126062 0.68 0.630577
Target:  5'- gGGUAGGguaaaCGGGCaCGAGGGgCGCCg -3'
miRNA:   3'- aCCAUUCg----GUCCGgGCUCCCaGUGGa -5'
28744 5' -59.9 NC_006146.1 + 33227 0.69 0.551459
Target:  5'- gGGgcAGCCGGGUggccgCCGGcGGGUcCGCCg -3'
miRNA:   3'- aCCauUCGGUCCG-----GGCU-CCCA-GUGGa -5'
28744 5' -59.9 NC_006146.1 + 153306 0.7 0.512959
Target:  5'- aGGca--CCAGGCCCGGGccaGGUCGCCc -3'
miRNA:   3'- aCCauucGGUCCGGGCUC---CCAGUGGa -5'
28744 5' -59.9 NC_006146.1 + 155552 0.71 0.484823
Target:  5'- aGGgcguugGAGCCGGGCUCGcgcGGGG-CGCCc -3'
miRNA:   3'- aCCa-----UUCGGUCCGGGC---UCCCaGUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.