miRNA display CGI


Results 61 - 80 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28744 5' -59.9 NC_006146.1 + 22071 0.67 0.719396
Target:  5'- cGGc-GGCCGGaCCCGAGGaGgCGCCUg -3'
miRNA:   3'- aCCauUCGGUCcGGGCUCC-CaGUGGA- -5'
28744 5' -59.9 NC_006146.1 + 56506 0.66 0.76664
Target:  5'- ----cAGUCGGGCCgCGGGGucGUCGCCg -3'
miRNA:   3'- accauUCGGUCCGG-GCUCC--CAGUGGa -5'
28744 5' -59.9 NC_006146.1 + 12882 0.68 0.649509
Target:  5'- gGGcAGGCCGGGUCUcgggucuGGGGGUCugUg -3'
miRNA:   3'- aCCaUUCGGUCCGGG-------CUCCCAGugGa -5'
28744 5' -59.9 NC_006146.1 + 19037 0.68 0.649509
Target:  5'- gGGcAGGCCGGGUCUcgggucuGGGGGUCugUg -3'
miRNA:   3'- aCCaUUCGGUCCGGG-------CUCCCAGugGa -5'
28744 5' -59.9 NC_006146.1 + 25193 0.68 0.649509
Target:  5'- gGGcAGGCCGGGUCUcgggucuGGGGGUCugUg -3'
miRNA:   3'- aCCaUUCGGUCCGGG-------CUCCCAGugGa -5'
28744 5' -59.9 NC_006146.1 + 28271 0.68 0.649509
Target:  5'- gGGcAGGCCGGGUCUcgggucuGGGGGUCugUg -3'
miRNA:   3'- aCCaUUCGGUCCGGG-------CUCCCAGugGa -5'
28744 5' -59.9 NC_006146.1 + 145127 0.67 0.670376
Target:  5'- aGGccUGGGCCAGGCUCuGGccGGUCACUa -3'
miRNA:   3'- aCC--AUUCGGUCCGGGcUC--CCAGUGGa -5'
28744 5' -59.9 NC_006146.1 + 50531 0.67 0.670376
Target:  5'- aGGUcagGAGCCgcuccAGGuCCCGGGuGGgCACCUg -3'
miRNA:   3'- aCCA---UUCGG-----UCC-GGGCUC-CCaGUGGA- -5'
28744 5' -59.9 NC_006146.1 + 56393 0.67 0.699942
Target:  5'- gGGUAAGCguGGCCgcucgCGAGGGUgAg-- -3'
miRNA:   3'- aCCAUUCGguCCGG-----GCUCCCAgUgga -5'
28744 5' -59.9 NC_006146.1 + 40733 0.67 0.7097
Target:  5'- cGGgcAGgCGGGCCCGugcuuGGGGcUgGCCa -3'
miRNA:   3'- aCCauUCgGUCCGGGC-----UCCC-AgUGGa -5'
28744 5' -59.9 NC_006146.1 + 170603 0.66 0.76664
Target:  5'- gUGGcGAgcgcGCCGGGCCCGcccccGGGUCuucCCg -3'
miRNA:   3'- -ACCaUU----CGGUCCGGGCu----CCCAGu--GGa -5'
28744 5' -59.9 NC_006146.1 + 3814 0.66 0.72902
Target:  5'- aGGUcuGGGUCAGGCCaggcGGGG-CACCc -3'
miRNA:   3'- aCCA--UUCGGUCCGGgc--UCCCaGUGGa -5'
28744 5' -59.9 NC_006146.1 + 22216 0.66 0.775783
Target:  5'- aGaGUcGGCCuAGGCCCGgggaguggagGGGGaUCGCCc -3'
miRNA:   3'- aC-CAuUCGG-UCCGGGC----------UCCC-AGUGGa -5'
28744 5' -59.9 NC_006146.1 + 169263 0.66 0.773053
Target:  5'- aGGgcgGGGCCgGGGCCUGgcgggggccagcgcGGGGUC-CCg -3'
miRNA:   3'- aCCa--UUCGG-UCCGGGC--------------UCCCAGuGGa -5'
28744 5' -59.9 NC_006146.1 + 159894 0.66 0.738566
Target:  5'- aGGgccucgAGGCCgGGGCCCucgaagauGGGGGgCACCa -3'
miRNA:   3'- aCCa-----UUCGG-UCCGGG--------CUCCCaGUGGa -5'
28744 5' -59.9 NC_006146.1 + 52909 0.66 0.757384
Target:  5'- aUGGUcuGCguGGCCCcccGGGGG-CGCUg -3'
miRNA:   3'- -ACCAuuCGguCCGGG---CUCCCaGUGGa -5'
28744 5' -59.9 NC_006146.1 + 141382 1.08 0.001575
Target:  5'- aUGGUAAGCCAGGCCCGAGGGUCACCUa -3'
miRNA:   3'- -ACCAUUCGGUCCGGGCUCCCAGUGGA- -5'
28744 5' -59.9 NC_006146.1 + 88337 0.68 0.617623
Target:  5'- aUGG-AGGCCguuGGGCCCaGGGGGUUaaaggaggcccauaACCUg -3'
miRNA:   3'- -ACCaUUCGG---UCCGGG-CUCCCAG--------------UGGA- -5'
28744 5' -59.9 NC_006146.1 + 104222 0.67 0.719396
Target:  5'- cGGggAAGCUGGGCUUccGGGUCAUCa -3'
miRNA:   3'- aCCa-UUCGGUCCGGGcuCCCAGUGGa -5'
28744 5' -59.9 NC_006146.1 + 114817 0.68 0.610654
Target:  5'- cUGGU-GGCCGacaccuacuuGGCCCGGuGGGaCGCCUu -3'
miRNA:   3'- -ACCAuUCGGU----------CCGGGCU-CCCaGUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.