miRNA display CGI


Results 61 - 80 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28744 5' -59.9 NC_006146.1 + 145439 0.67 0.690129
Target:  5'- gGGUcuuGGGCCugggAGGUCCGGGGuGUUgaGCCUg -3'
miRNA:   3'- aCCA---UUCGG----UCCGGGCUCC-CAG--UGGA- -5'
28744 5' -59.9 NC_006146.1 + 92087 0.67 0.690129
Target:  5'- gGGgcGGCCcGGCCUGGGGcugCugCUg -3'
miRNA:   3'- aCCauUCGGuCCGGGCUCCca-GugGA- -5'
28744 5' -59.9 NC_006146.1 + 142361 0.67 0.690129
Target:  5'- gGGUcuuGGGCCugggAGGUCCGGGGuGUUgaGCCUg -3'
miRNA:   3'- aCCA---UUCGG----UCCGGGCUCC-CAG--UGGA- -5'
28744 5' -59.9 NC_006146.1 + 148517 0.67 0.690129
Target:  5'- gGGUcuuGGGCCugggAGGUCCGGGGuGUUgaGCCUg -3'
miRNA:   3'- aCCA---UUCGG----UCCGGGCUCC-CAG--UGGA- -5'
28744 5' -59.9 NC_006146.1 + 86454 0.67 0.670376
Target:  5'- gGGgcAGCUGGGCuUUGAGGGggcaGCCUg -3'
miRNA:   3'- aCCauUCGGUCCG-GGCUCCCag--UGGA- -5'
28744 5' -59.9 NC_006146.1 + 50531 0.67 0.670376
Target:  5'- aGGUcagGAGCCgcuccAGGuCCCGGGuGGgCACCUg -3'
miRNA:   3'- aCCA---UUCGG-----UCC-GGGCUC-CCaGUGGA- -5'
28744 5' -59.9 NC_006146.1 + 145127 0.67 0.670376
Target:  5'- aGGccUGGGCCAGGCUCuGGccGGUCACUa -3'
miRNA:   3'- aCC--AUUCGGUCCGGGcUC--CCAGUGGa -5'
28744 5' -59.9 NC_006146.1 + 53115 0.68 0.660451
Target:  5'- aGGc-GGCCcGGCCCGGGGGagCGCg- -3'
miRNA:   3'- aCCauUCGGuCCGGGCUCCCa-GUGga -5'
28744 5' -59.9 NC_006146.1 + 137860 0.68 0.654485
Target:  5'- gGGUGGGCguguccCGGGCCCcgccccgggccggcaGGGGGUCcCCg -3'
miRNA:   3'- aCCAUUCG------GUCCGGG---------------CUCCCAGuGGa -5'
28744 5' -59.9 NC_006146.1 + 19037 0.68 0.649509
Target:  5'- gGGcAGGCCGGGUCUcgggucuGGGGGUCugUg -3'
miRNA:   3'- aCCaUUCGGUCCGGG-------CUCCCAGugGa -5'
28744 5' -59.9 NC_006146.1 + 25193 0.68 0.649509
Target:  5'- gGGcAGGCCGGGUCUcgggucuGGGGGUCugUg -3'
miRNA:   3'- aCCaUUCGGUCCGGG-------CUCCCAGugGa -5'
28744 5' -59.9 NC_006146.1 + 12882 0.68 0.649509
Target:  5'- gGGcAGGCCGGGUCUcgggucuGGGGGUCugUg -3'
miRNA:   3'- aCCaUUCGGUCCGGG-------CUCCCAGugGa -5'
28744 5' -59.9 NC_006146.1 + 28271 0.68 0.649509
Target:  5'- gGGcAGGCCGGGUCUcgggucuGGGGGUCugUg -3'
miRNA:   3'- aCCaUUCGGUCCGGG-------CUCCCAGugGa -5'
28744 5' -59.9 NC_006146.1 + 22115 0.68 0.649509
Target:  5'- gGGcAGGCCGGGUCUcgggucuGGGGGUCugUg -3'
miRNA:   3'- aCCaUUCGGUCCGGG-------CUCCCAGugGa -5'
28744 5' -59.9 NC_006146.1 + 167181 0.68 0.640544
Target:  5'- cGGgaGGCCGGcgcgcGCCCG-GGGUC-CCg -3'
miRNA:   3'- aCCauUCGGUC-----CGGGCuCCCAGuGGa -5'
28744 5' -59.9 NC_006146.1 + 168113 0.68 0.640544
Target:  5'- cGGgaGGCCGGcgcgcGCCCG-GGGUC-CCg -3'
miRNA:   3'- aCCauUCGGUC-----CGGGCuCCCAGuGGa -5'
28744 5' -59.9 NC_006146.1 + 169045 0.68 0.640544
Target:  5'- cGGgaGGCCGGcgcgcGCCCG-GGGUC-CCg -3'
miRNA:   3'- aCCauUCGGUC-----CGGGCuCCCAGuGGa -5'
28744 5' -59.9 NC_006146.1 + 169977 0.68 0.640544
Target:  5'- cGGgaGGCCGGcgcgcGCCCG-GGGUC-CCg -3'
miRNA:   3'- aCCauUCGGUC-----CGGGCuCCCAGuGGa -5'
28744 5' -59.9 NC_006146.1 + 156718 0.68 0.630577
Target:  5'- -----cGuCCAGGCuCCGGGGGUCcaGCCUg -3'
miRNA:   3'- accauuC-GGUCCG-GGCUCCCAG--UGGA- -5'
28744 5' -59.9 NC_006146.1 + 15960 0.68 0.630577
Target:  5'- gGGcAGGCCggucucGGGUCUGGGGGUCugUg -3'
miRNA:   3'- aCCaUUCGG------UCCGGGCUCCCAGugGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.