miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28745 3' -57.5 NC_006146.1 + 147119 1.12 0.001322
Target:  5'- uUCCUGGGUCCAGGGCCGCCAUUAUGCg -3'
miRNA:   3'- -AGGACCCAGGUCCCGGCGGUAAUACG- -5'
28745 3' -57.5 NC_006146.1 + 144041 1.12 0.001322
Target:  5'- uUCCUGGGUCCAGGGCCGCCAUUAUGCg -3'
miRNA:   3'- -AGGACCCAGGUCCCGGCGGUAAUACG- -5'
28745 3' -57.5 NC_006146.1 + 153275 1.12 0.001322
Target:  5'- uUCCUGGGUCCAGGGCCGCCAUUAUGCg -3'
miRNA:   3'- -AGGACCCAGGUCCCGGCGGUAAUACG- -5'
28745 3' -57.5 NC_006146.1 + 156353 1.12 0.001322
Target:  5'- uUCCUGGGUCCAGGGCCGCCAUUAUGCg -3'
miRNA:   3'- -AGGACCCAGGUCCCGGCGGUAAUACG- -5'
28745 3' -57.5 NC_006146.1 + 150197 1.12 0.001322
Target:  5'- uUCCUGGGUCCAGGGCCGCCAUUAUGCg -3'
miRNA:   3'- -AGGACCCAGGUCCCGGCGGUAAUACG- -5'
28745 3' -57.5 NC_006146.1 + 107402 0.75 0.390971
Target:  5'- ---aGGGUCCAGGGCUGCgGc-GUGCa -3'
miRNA:   3'- aggaCCCAGGUCCCGGCGgUaaUACG- -5'
28745 3' -57.5 NC_006146.1 + 71456 0.74 0.413757
Target:  5'- cUCUGGGgauguggaacuguuUCCAGGGCCuGCCGUUuggccggugGUGCc -3'
miRNA:   3'- aGGACCC--------------AGGUCCCGG-CGGUAA---------UACG- -5'
28745 3' -57.5 NC_006146.1 + 49249 0.73 0.460768
Target:  5'- cUCC-GGGUCCAGGGCCGgUAgcccccUGUa -3'
miRNA:   3'- -AGGaCCCAGGUCCCGGCgGUaau---ACG- -5'
28745 3' -57.5 NC_006146.1 + 158071 0.73 0.488597
Target:  5'- cUCCUcGGGUCC--GGCCGCCGgaggGCu -3'
miRNA:   3'- -AGGA-CCCAGGucCCGGCGGUaauaCG- -5'
28745 3' -57.5 NC_006146.1 + 145758 0.73 0.488597
Target:  5'- cUCCUcGGGUCC--GGCCGCCGgaggGCu -3'
miRNA:   3'- -AGGA-CCCAGGucCCGGCGGUaauaCG- -5'
28745 3' -57.5 NC_006146.1 + 142681 0.73 0.488597
Target:  5'- cUCCUcGGGUCC--GGCCGCCGgaggGCu -3'
miRNA:   3'- -AGGA-CCCAGGucCCGGCGGUaauaCG- -5'
28745 3' -57.5 NC_006146.1 + 154992 0.73 0.488597
Target:  5'- cUCCUcGGGUCC--GGCCGCCGgaggGCu -3'
miRNA:   3'- -AGGA-CCCAGGucCCGGCGGUaauaCG- -5'
28745 3' -57.5 NC_006146.1 + 151914 0.73 0.488597
Target:  5'- cUCCUcGGGUCC--GGCCGCCGgaggGCu -3'
miRNA:   3'- -AGGA-CCCAGGucCCGGCGGUaauaCG- -5'
28745 3' -57.5 NC_006146.1 + 148836 0.73 0.488597
Target:  5'- cUCCUcGGGUCC--GGCCGCCGgaggGCu -3'
miRNA:   3'- -AGGA-CCCAGGucCCGGCGGUaauaCG- -5'
28745 3' -57.5 NC_006146.1 + 68939 0.72 0.526872
Target:  5'- gCCUGGGcCCAGGagaucuCCGCCGUUGUc- -3'
miRNA:   3'- aGGACCCaGGUCCc-----GGCGGUAAUAcg -5'
28745 3' -57.5 NC_006146.1 + 33214 0.72 0.556297
Target:  5'- cUCCUGGuGcUCCGGGGCaGCCGggugGCc -3'
miRNA:   3'- -AGGACC-C-AGGUCCCGgCGGUaauaCG- -5'
28745 3' -57.5 NC_006146.1 + 121481 0.71 0.606269
Target:  5'- gCC-GGGUCCaucgugGGGGCCGCCAa----- -3'
miRNA:   3'- aGGaCCCAGG------UCCCGGCGGUaauacg -5'
28745 3' -57.5 NC_006146.1 + 24219 0.71 0.616347
Target:  5'- uUCUguUGGGgCCGGGGCCGCCcacc-GCc -3'
miRNA:   3'- -AGG--ACCCaGGUCCCGGCGGuaauaCG- -5'
28745 3' -57.5 NC_006146.1 + 3012 0.71 0.606269
Target:  5'- cCCgcgaGGGUCCccGGGCCGCCccgggGCu -3'
miRNA:   3'- aGGa---CCCAGGu-CCCGGCGGuaauaCG- -5'
28745 3' -57.5 NC_006146.1 + 15039 0.71 0.586177
Target:  5'- gCCUGG--CCAGGGcCCGCCGggccUGCg -3'
miRNA:   3'- aGGACCcaGGUCCC-GGCGGUaau-ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.