miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28745 3' -57.5 NC_006146.1 + 168200 0.69 0.716482
Target:  5'- ---aGGGcCCGGGGCCGCgCGUggggAUGg -3'
miRNA:   3'- aggaCCCaGGUCCCGGCG-GUAa---UACg -5'
28745 3' -57.5 NC_006146.1 + 107402 0.75 0.390971
Target:  5'- ---aGGGUCCAGGGCUGCgGc-GUGCa -3'
miRNA:   3'- aggaCCCAGGUCCCGGCGgUaaUACG- -5'
28745 3' -57.5 NC_006146.1 + 71456 0.74 0.413757
Target:  5'- cUCUGGGgauguggaacuguuUCCAGGGCCuGCCGUUuggccggugGUGCc -3'
miRNA:   3'- aGGACCC--------------AGGUCCCGG-CGGUAA---------UACG- -5'
28745 3' -57.5 NC_006146.1 + 47396 0.7 0.66676
Target:  5'- gCCUGGGgucgaccguggCCAGGGCCaGCCuca--GCu -3'
miRNA:   3'- aGGACCCa----------GGUCCCGG-CGGuaauaCG- -5'
28745 3' -57.5 NC_006146.1 + 33320 0.7 0.676792
Target:  5'- gUCCUGGGgcUCCGGGGuCCGg----GUGCu -3'
miRNA:   3'- -AGGACCC--AGGUCCC-GGCgguaaUACG- -5'
28745 3' -57.5 NC_006146.1 + 49249 0.73 0.460768
Target:  5'- cUCC-GGGUCCAGGGCCGgUAgcccccUGUa -3'
miRNA:   3'- -AGGaCCCAGGUCCCGGCgGUaau---ACG- -5'
28745 3' -57.5 NC_006146.1 + 162864 0.71 0.596211
Target:  5'- gCC-GGGUCCAGcGGgUGCCAgcgauagAUGCa -3'
miRNA:   3'- aGGaCCCAGGUC-CCgGCGGUaa-----UACG- -5'
28745 3' -57.5 NC_006146.1 + 110161 0.7 0.64662
Target:  5'- gUCUUGGcggaucucuGUCCAGGGCCucagcGCCGguuggagAUGCg -3'
miRNA:   3'- -AGGACC---------CAGGUCCCGG-----CGGUaa-----UACG- -5'
28745 3' -57.5 NC_006146.1 + 167268 0.69 0.716482
Target:  5'- ---aGGGcCCGGGGCCGCgCGUggggAUGg -3'
miRNA:   3'- aggaCCCaGGUCCCGGCG-GUAa---UACg -5'
28745 3' -57.5 NC_006146.1 + 115507 0.69 0.735941
Target:  5'- gUCCUgGGGUCCcGGaGCagcguGCCAUUGcGCu -3'
miRNA:   3'- -AGGA-CCCAGGuCC-CGg----CGGUAAUaCG- -5'
28745 3' -57.5 NC_006146.1 + 145707 0.66 0.880324
Target:  5'- gCCUGGGagCAGGaGCgCGUCAgcuugAUGUc -3'
miRNA:   3'- aGGACCCagGUCC-CG-GCGGUaa---UACG- -5'
28745 3' -57.5 NC_006146.1 + 33214 0.72 0.556297
Target:  5'- cUCCUGGuGcUCCGGGGCaGCCGggugGCc -3'
miRNA:   3'- -AGGACC-C-AGGUCCCGgCGGUaauaCG- -5'
28745 3' -57.5 NC_006146.1 + 68939 0.72 0.526872
Target:  5'- gCCUGGGcCCAGGagaucuCCGCCGUUGUc- -3'
miRNA:   3'- aGGACCCaGGUCCc-----GGCGGUAAUAcg -5'
28745 3' -57.5 NC_006146.1 + 59255 0.69 0.68679
Target:  5'- gCCUGGGUguUCAGGGCCugGCCGa----- -3'
miRNA:   3'- aGGACCCA--GGUCCCGG--CGGUaauacg -5'
28745 3' -57.5 NC_006146.1 + 147730 0.69 0.706643
Target:  5'- gCCUGGGUaauagcGGGCCGCgAgcgacucUGUGCa -3'
miRNA:   3'- aGGACCCAggu---CCCGGCGgUa------AUACG- -5'
28745 3' -57.5 NC_006146.1 + 5201 0.71 0.596211
Target:  5'- cCCUGGGcCUGGGGgaGCUAgggGUGCa -3'
miRNA:   3'- aGGACCCaGGUCCCggCGGUaa-UACG- -5'
28745 3' -57.5 NC_006146.1 + 170064 0.69 0.716482
Target:  5'- ---aGGGcCCGGGGCCGCgCGUggggAUGg -3'
miRNA:   3'- aggaCCCaGGUCCCGGCG-GUAa---UACg -5'
28745 3' -57.5 NC_006146.1 + 33366 0.68 0.745543
Target:  5'- gCCggUGGGUCCGccGGGCCGCUgccccGCu -3'
miRNA:   3'- aGG--ACCCAGGU--CCCGGCGGuaauaCG- -5'
28745 3' -57.5 NC_006146.1 + 114171 0.71 0.616347
Target:  5'- cCCUGGGcagCAGGGUCaCCAUgAUGCa -3'
miRNA:   3'- aGGACCCag-GUCCCGGcGGUAaUACG- -5'
28745 3' -57.5 NC_006146.1 + 153208 0.69 0.68679
Target:  5'- gCUUGGccgCCAcGGGCCGCCcgUAgaUGCc -3'
miRNA:   3'- aGGACCca-GGU-CCCGGCGGuaAU--ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.