miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28745 3' -57.5 NC_006146.1 + 107402 0.75 0.390971
Target:  5'- ---aGGGUCCAGGGCUGCgGc-GUGCa -3'
miRNA:   3'- aggaCCCAGGUCCCGGCGgUaaUACG- -5'
28745 3' -57.5 NC_006146.1 + 135729 0.68 0.782898
Target:  5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3'
miRNA:   3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5'
28745 3' -57.5 NC_006146.1 + 135637 0.68 0.782898
Target:  5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3'
miRNA:   3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5'
28745 3' -57.5 NC_006146.1 + 107623 0.68 0.764449
Target:  5'- aCCgGaGGUgCCAGGGCUGUCAUc-UGCc -3'
miRNA:   3'- aGGaC-CCA-GGUCCCGGCGGUAauACG- -5'
28745 3' -57.5 NC_006146.1 + 59255 0.69 0.68679
Target:  5'- gCCUGGGUguUCAGGGCCugGCCGa----- -3'
miRNA:   3'- aGGACCCA--GGUCCCGG--CGGUaauacg -5'
28745 3' -57.5 NC_006146.1 + 136287 0.68 0.782898
Target:  5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3'
miRNA:   3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5'
28745 3' -57.5 NC_006146.1 + 135915 0.68 0.782898
Target:  5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3'
miRNA:   3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5'
28745 3' -57.5 NC_006146.1 + 110161 0.7 0.64662
Target:  5'- gUCUUGGcggaucucuGUCCAGGGCCucagcGCCGguuggagAUGCg -3'
miRNA:   3'- -AGGACC---------CAGGUCCCGG-----CGGUaa-----UACG- -5'
28745 3' -57.5 NC_006146.1 + 135172 0.68 0.782898
Target:  5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3'
miRNA:   3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5'
28745 3' -57.5 NC_006146.1 + 55044 0.68 0.773735
Target:  5'- gUCgGGG-CCGGGGCCuGCCAcag-GCg -3'
miRNA:   3'- aGGaCCCaGGUCCCGG-CGGUaauaCG- -5'
28745 3' -57.5 NC_006146.1 + 162864 0.71 0.596211
Target:  5'- gCC-GGGUCCAGcGGgUGCCAgcgauagAUGCa -3'
miRNA:   3'- aGGaCCCAGGUC-CCgGCGGUaa-----UACG- -5'
28745 3' -57.5 NC_006146.1 + 5201 0.71 0.596211
Target:  5'- cCCUGGGcCUGGGGgaGCUAgggGUGCa -3'
miRNA:   3'- aGGACCCaGGUCCCggCGGUaa-UACG- -5'
28745 3' -57.5 NC_006146.1 + 136566 0.68 0.782898
Target:  5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3'
miRNA:   3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5'
28745 3' -57.5 NC_006146.1 + 136380 0.68 0.782898
Target:  5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3'
miRNA:   3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5'
28745 3' -57.5 NC_006146.1 + 135544 0.68 0.782898
Target:  5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3'
miRNA:   3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5'
28745 3' -57.5 NC_006146.1 + 168200 0.69 0.716482
Target:  5'- ---aGGGcCCGGGGCCGCgCGUggggAUGg -3'
miRNA:   3'- aggaCCCaGGUCCCGGCG-GUAa---UACg -5'
28745 3' -57.5 NC_006146.1 + 147730 0.69 0.706643
Target:  5'- gCCUGGGUaauagcGGGCCGCgAgcgacucUGUGCa -3'
miRNA:   3'- aGGACCCAggu---CCCGGCGgUa------AUACG- -5'
28745 3' -57.5 NC_006146.1 + 33214 0.72 0.556297
Target:  5'- cUCCUGGuGcUCCGGGGCaGCCGggugGCc -3'
miRNA:   3'- -AGGACC-C-AGGUCCCGgCGGUaauaCG- -5'
28745 3' -57.5 NC_006146.1 + 124288 0.68 0.768178
Target:  5'- gCC-GGGacaucaacaggcucuUCCAGGGCCagGCCAaugGUGCu -3'
miRNA:   3'- aGGaCCC---------------AGGUCCCGG--CGGUaa-UACG- -5'
28745 3' -57.5 NC_006146.1 + 135265 0.68 0.782898
Target:  5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3'
miRNA:   3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.