Results 1 - 20 of 122 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28745 | 3' | -57.5 | NC_006146.1 | + | 57932 | 0.66 | 0.880324 |
Target: 5'- -gCUGG--CCGGcGCCGCCAUgGUGCu -3' miRNA: 3'- agGACCcaGGUCcCGGCGGUAaUACG- -5' |
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28745 | 3' | -57.5 | NC_006146.1 | + | 166532 | 0.66 | 0.880324 |
Target: 5'- gCCUGGGgagCCcgcGGGGCCgugGCCAcgucGCu -3' miRNA: 3'- aGGACCCa--GG---UCCCGG---CGGUaauaCG- -5' |
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28745 | 3' | -57.5 | NC_006146.1 | + | 71247 | 0.66 | 0.880324 |
Target: 5'- cUCCUGGGgCCuggcggGGGGCgGCCucuacGCc -3' miRNA: 3'- -AGGACCCaGG------UCCCGgCGGuaauaCG- -5' |
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28745 | 3' | -57.5 | NC_006146.1 | + | 145707 | 0.66 | 0.880324 |
Target: 5'- gCCUGGGagCAGGaGCgCGUCAgcuugAUGUc -3' miRNA: 3'- aGGACCCagGUCC-CG-GCGGUaa---UACG- -5' |
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28745 | 3' | -57.5 | NC_006146.1 | + | 117540 | 0.66 | 0.873246 |
Target: 5'- cCCUcGGGgCCuGGGCCGCauucagGCu -3' miRNA: 3'- aGGA-CCCaGGuCCCGGCGguaauaCG- -5' |
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28745 | 3' | -57.5 | NC_006146.1 | + | 142055 | 0.66 | 0.873246 |
Target: 5'- cUCUGGGgCCAcccGGGCUGCCGgg--GUc -3' miRNA: 3'- aGGACCCaGGU---CCCGGCGGUaauaCG- -5' |
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28745 | 3' | -57.5 | NC_006146.1 | + | 145133 | 0.66 | 0.873246 |
Target: 5'- cUCUGGGgCCAcccGGGCUGCCGgg--GUc -3' miRNA: 3'- aGGACCCaGGU---CCCGGCGGUaauaCG- -5' |
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28745 | 3' | -57.5 | NC_006146.1 | + | 148211 | 0.66 | 0.873246 |
Target: 5'- cUCUGGGgCCAcccGGGCUGCCGgg--GUc -3' miRNA: 3'- aGGACCCaGGU---CCCGGCGGUaauaCG- -5' |
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28745 | 3' | -57.5 | NC_006146.1 | + | 151289 | 0.66 | 0.873246 |
Target: 5'- cUCUGGGgCCAcccGGGCUGCCGgg--GUc -3' miRNA: 3'- aGGACCCaGGU---CCCGGCGGUaauaCG- -5' |
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28745 | 3' | -57.5 | NC_006146.1 | + | 154367 | 0.66 | 0.873246 |
Target: 5'- cUCUGGGgCCAcccGGGCUGCCGgg--GUc -3' miRNA: 3'- aGGACCCaGGU---CCCGGCGGUaauaCG- -5' |
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28745 | 3' | -57.5 | NC_006146.1 | + | 157445 | 0.66 | 0.873246 |
Target: 5'- cUCUGGGgCCAcccGGGCUGCCGgg--GUc -3' miRNA: 3'- aGGACCCaGGU---CCCGGCGGUaauaCG- -5' |
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28745 | 3' | -57.5 | NC_006146.1 | + | 118975 | 0.66 | 0.873246 |
Target: 5'- aCCgca--CCGGGGCCGCCcgUcgGUGCc -3' miRNA: 3'- aGGacccaGGUCCCGGCGGuaA--UACG- -5' |
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28745 | 3' | -57.5 | NC_006146.1 | + | 56233 | 0.66 | 0.871082 |
Target: 5'- gUCCagcGGGUCCgcgggggcggaggcGGGGCCGUCcucg-GCg -3' miRNA: 3'- -AGGa--CCCAGG--------------UCCCGGCGGuaauaCG- -5' |
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28745 | 3' | -57.5 | NC_006146.1 | + | 123059 | 0.66 | 0.865959 |
Target: 5'- gCC-GGGUCCAGGGaCGCgucc-UGCg -3' miRNA: 3'- aGGaCCCAGGUCCCgGCGguaauACG- -5' |
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28745 | 3' | -57.5 | NC_006146.1 | + | 27614 | 0.66 | 0.865958 |
Target: 5'- cUCC-GGGUCCAcuGGGUgGCCAg----- -3' miRNA: 3'- -AGGaCCCAGGU--CCCGgCGGUaauacg -5' |
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28745 | 3' | -57.5 | NC_006146.1 | + | 6444 | 0.66 | 0.865958 |
Target: 5'- cCCUgGGGUCCauGGGGCC-CCAa----- -3' miRNA: 3'- aGGA-CCCAGG--UCCCGGcGGUaauacg -5' |
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28745 | 3' | -57.5 | NC_006146.1 | + | 157759 | 0.66 | 0.865958 |
Target: 5'- gCCUGGGaggUCCGGGGUguugaGCCugc-UGCc -3' miRNA: 3'- aGGACCC---AGGUCCCGg----CGGuaauACG- -5' |
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28745 | 3' | -57.5 | NC_006146.1 | + | 151604 | 0.66 | 0.865958 |
Target: 5'- gCCUGGGaggUCCGGGGUguugaGCCugc-UGCc -3' miRNA: 3'- aGGACCC---AGGUCCCGg----CGGuaauACG- -5' |
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28745 | 3' | -57.5 | NC_006146.1 | + | 148526 | 0.66 | 0.865958 |
Target: 5'- gCCUGGGaggUCCGGGGUguugaGCCugc-UGCc -3' miRNA: 3'- aGGACCC---AGGUCCCGg----CGGuaauACG- -5' |
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28745 | 3' | -57.5 | NC_006146.1 | + | 145448 | 0.66 | 0.865958 |
Target: 5'- gCCUGGGaggUCCGGGGUguugaGCCugc-UGCc -3' miRNA: 3'- aGGACCC---AGGUCCCGg----CGGuaauACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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