miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28745 5' -53.6 NC_006146.1 + 133833 0.77 0.475239
Target:  5'- gGGugAGGAUGGUggGCCCAGAcgcaGCCUCu -3'
miRNA:   3'- -UCugUUUUACCG--CGGGUCUag--CGGAG- -5'
28745 5' -53.6 NC_006146.1 + 27678 0.67 0.940416
Target:  5'- gGGugGGAucaGGCuaaCCCAaGUCGCCUCa -3'
miRNA:   3'- -UCugUUUua-CCGc--GGGUcUAGCGGAG- -5'
28745 5' -53.6 NC_006146.1 + 24600 0.67 0.940416
Target:  5'- gGGugGGAucaGGCuaaCCCAaGUCGCCUCa -3'
miRNA:   3'- -UCugUUUua-CCGc--GGGUcUAGCGGAG- -5'
28745 5' -53.6 NC_006146.1 + 48640 0.68 0.913471
Target:  5'- cGGGCuccGGGcgGGUGCCCAG--CGCCUUc -3'
miRNA:   3'- -UCUG---UUUuaCCGCGGGUCuaGCGGAG- -5'
28745 5' -53.6 NC_006146.1 + 169376 0.7 0.824648
Target:  5'- gGGGCAGGGcUGGCGCCgGGccgCGCCc- -3'
miRNA:   3'- -UCUGUUUU-ACCGCGGgUCua-GCGGag -5'
28745 5' -53.6 NC_006146.1 + 13272 0.67 0.949464
Target:  5'- gGGACc----GGCGCCCcagagccccucGGGUCcGCCUCc -3'
miRNA:   3'- -UCUGuuuuaCCGCGGG-----------UCUAG-CGGAG- -5'
28745 5' -53.6 NC_006146.1 + 99817 0.67 0.945062
Target:  5'- cGGCGAGggGGUGUUCGGG--GCCUCg -3'
miRNA:   3'- uCUGUUUuaCCGCGGGUCUagCGGAG- -5'
28745 5' -53.6 NC_006146.1 + 112216 0.7 0.824648
Target:  5'- uGGACAGGGUGGCgGCCUGGGUgGUUg- -3'
miRNA:   3'- -UCUGUUUUACCG-CGGGUCUAgCGGag -5'
28745 5' -53.6 NC_006146.1 + 65211 0.67 0.929855
Target:  5'- gGGGCccuGGGAgcccgGGCGUCCAGAggugaccUCGCUUCc -3'
miRNA:   3'- -UCUG---UUUUa----CCGCGGGUCU-------AGCGGAG- -5'
28745 5' -53.6 NC_006146.1 + 110924 0.68 0.924994
Target:  5'- aGGACAGcAUGGUcucguGCCCcugcuuUCGCCUCc -3'
miRNA:   3'- -UCUGUUuUACCG-----CGGGucu---AGCGGAG- -5'
28745 5' -53.6 NC_006146.1 + 68739 0.71 0.797877
Target:  5'- -cGCGGGGUGGUggagGCCCAGGUgGCCa- -3'
miRNA:   3'- ucUGUUUUACCG----CGGGUCUAgCGGag -5'
28745 5' -53.6 NC_006146.1 + 57996 0.72 0.720331
Target:  5'- aGGACGAGcUGGagGCCCGGGUCucgGCCUUc -3'
miRNA:   3'- -UCUGUUUuACCg-CGGGUCUAG---CGGAG- -5'
28745 5' -53.6 NC_006146.1 + 22506 0.67 0.949464
Target:  5'- gGGACc----GGCGCCCcagagccccucGGGUCcGCCUCc -3'
miRNA:   3'- -UCUGuuuuaCCGCGGG-----------UCUAG-CGGAG- -5'
28745 5' -53.6 NC_006146.1 + 16350 0.67 0.949464
Target:  5'- gGGACc----GGCGCCCcagagccccucGGGUCcGCCUCc -3'
miRNA:   3'- -UCUGuuuuaCCGCGGG-----------UCUAG-CGGAG- -5'
28745 5' -53.6 NC_006146.1 + 21522 0.67 0.940416
Target:  5'- gGGugGGAucaGGCuaaCCCAaGUCGCCUCa -3'
miRNA:   3'- -UCugUUUua-CCGc--GGGUcUAGCGGAG- -5'
28745 5' -53.6 NC_006146.1 + 92444 0.69 0.880392
Target:  5'- gAGACuguAGcGGCGCCgGGAUgGCCa- -3'
miRNA:   3'- -UCUGuu-UUaCCGCGGgUCUAgCGGag -5'
28745 5' -53.6 NC_006146.1 + 170307 0.7 0.824648
Target:  5'- gGGGCAGGGcUGGCGCCgGGccgCGCCc- -3'
miRNA:   3'- -UCUGUUUU-ACCGCGGgUCua-GCGGag -5'
28745 5' -53.6 NC_006146.1 + 135 0.73 0.689684
Target:  5'- aGGACu--AUGGCGCCUGGAUgGCUg- -3'
miRNA:   3'- -UCUGuuuUACCGCGGGUCUAgCGGag -5'
28745 5' -53.6 NC_006146.1 + 88259 0.68 0.913471
Target:  5'- cAGGCAAAAUccGGCGUgugCUGGGUCggGCCUCu -3'
miRNA:   3'- -UCUGUUUUA--CCGCG---GGUCUAG--CGGAG- -5'
28745 5' -53.6 NC_006146.1 + 12287 0.67 0.940416
Target:  5'- gGGugGGAucaGGCuaaCCCAaGUCGCCUCa -3'
miRNA:   3'- -UCugUUUua-CCGc--GGGUcUAGCGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.