miRNA display CGI


Results 41 - 60 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28745 5' -53.6 NC_006146.1 + 56583 0.66 0.96794
Target:  5'- gGGGCGGccgGGCGCCgAGccCGCCg- -3'
miRNA:   3'- -UCUGUUuuaCCGCGGgUCuaGCGGag -5'
28745 5' -53.6 NC_006146.1 + 96830 0.66 0.967626
Target:  5'- gGGACGGGcgGGCagguuggGCCCGcuUCaGCCUCu -3'
miRNA:   3'- -UCUGUUUuaCCG-------CGGGUcuAG-CGGAG- -5'
28745 5' -53.6 NC_006146.1 + 18444 0.67 0.940416
Target:  5'- gGGugGGAucaGGCuaaCCCAaGUCGCCUCa -3'
miRNA:   3'- -UCugUUUua-CCGc--GGGUcUAGCGGAG- -5'
28745 5' -53.6 NC_006146.1 + 67788 0.68 0.900961
Target:  5'- gGGACGuGAcGGCGgCCAGGcucugcccCGCCUCg -3'
miRNA:   3'- -UCUGUuUUaCCGCgGGUCUa-------GCGGAG- -5'
28745 5' -53.6 NC_006146.1 + 68331 0.69 0.887484
Target:  5'- cGAgAGGAUGGCGUCgAGGaCGgCCUCc -3'
miRNA:   3'- uCUgUUUUACCGCGGgUCUaGC-GGAG- -5'
28745 5' -53.6 NC_006146.1 + 47714 0.67 0.945062
Target:  5'- aGGugGGGAgcaGCGCCCGGAgcUCGUCg- -3'
miRNA:   3'- -UCugUUUUac-CGCGGGUCU--AGCGGag -5'
28745 5' -53.6 NC_006146.1 + 147179 0.67 0.949464
Target:  5'- -cGCAGAccGGCGCCCcu-UCGCC-Cg -3'
miRNA:   3'- ucUGUUUuaCCGCGGGucuAGCGGaG- -5'
28745 5' -53.6 NC_006146.1 + 25584 0.67 0.949464
Target:  5'- gGGACc----GGCGCCCcagagccccucGGGUCcGCCUCc -3'
miRNA:   3'- -UCUGuuuuaCCGCGGG-----------UCUAG-CGGAG- -5'
28745 5' -53.6 NC_006146.1 + 89683 0.67 0.945062
Target:  5'- cGACGGAA-GGgGCCCGGGgaacgGCCUg -3'
miRNA:   3'- uCUGUUUUaCCgCGGGUCUag---CGGAg -5'
28745 5' -53.6 NC_006146.1 + 88259 0.68 0.913471
Target:  5'- cAGGCAAAAUccGGCGUgugCUGGGUCggGCCUCu -3'
miRNA:   3'- -UCUGUUUUA--CCGCG---GGUCUAG--CGGAG- -5'
28745 5' -53.6 NC_006146.1 + 128180 0.66 0.970962
Target:  5'- cGACGccGGGaGGCgGCCCAGGggggCGCCg- -3'
miRNA:   3'- uCUGU--UUUaCCG-CGGGUCUa---GCGGag -5'
28745 5' -53.6 NC_006146.1 + 85918 0.66 0.96794
Target:  5'- gGGGCuuuacccUGGgGCCUGGAUgGCCUg -3'
miRNA:   3'- -UCUGuuuu---ACCgCGGGUCUAgCGGAg -5'
28745 5' -53.6 NC_006146.1 + 170638 0.66 0.9647
Target:  5'- cGGGCucccccucacGGGUGGCGCgCAGAUCGgCg- -3'
miRNA:   3'- -UCUGu---------UUUACCGCGgGUCUAGCgGag -5'
28745 5' -53.6 NC_006146.1 + 160179 0.66 0.9647
Target:  5'- uGGCuc--UGGCuGCCCAGAuuauccUCGCCa- -3'
miRNA:   3'- uCUGuuuuACCG-CGGGUCU------AGCGGag -5'
28745 5' -53.6 NC_006146.1 + 146719 0.66 0.957548
Target:  5'- cGGugGAGGUGGC-CCCGGG-CGCa-- -3'
miRNA:   3'- -UCugUUUUACCGcGGGUCUaGCGgag -5'
28745 5' -53.6 NC_006146.1 + 149797 0.66 0.957548
Target:  5'- cGGugGAGGUGGC-CCCGGG-CGCa-- -3'
miRNA:   3'- -UCugUUUUACCGcGGGUCUaGCGgag -5'
28745 5' -53.6 NC_006146.1 + 20279 0.68 0.90031
Target:  5'- cGugGAGGUGGCcgagaucGCCaAGAUCGCC-Ca -3'
miRNA:   3'- uCugUUUUACCG-------CGGgUCUAGCGGaG- -5'
28745 5' -53.6 NC_006146.1 + 158136 0.69 0.894342
Target:  5'- gGGACcuGGUGGCGCCCGc--CGgCUCc -3'
miRNA:   3'- -UCUGuuUUACCGCGGGUcuaGCgGAG- -5'
28745 5' -53.6 NC_006146.1 + 43372 0.66 0.967939
Target:  5'- gAGACGGAGuUGGUgaaGUUCAGGUUGCCccUCa -3'
miRNA:   3'- -UCUGUUUU-ACCG---CGGGUCUAGCGG--AG- -5'
28745 5' -53.6 NC_006146.1 + 151979 0.69 0.894342
Target:  5'- gGGACcuGGUGGCGCCCGc--CGgCUCc -3'
miRNA:   3'- -UCUGuuUUACCGCGGGUcuaGCgGAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.