Results 41 - 60 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28745 | 5' | -53.6 | NC_006146.1 | + | 143693 | 0.67 | 0.949034 |
Target: 5'- gGGACAGAGuuagaaguuagccUGGgGCCuCGGAggGCCUg -3' miRNA: 3'- -UCUGUUUU-------------ACCgCGG-GUCUagCGGAg -5' |
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28745 | 5' | -53.6 | NC_006146.1 | + | 47714 | 0.67 | 0.945062 |
Target: 5'- aGGugGGGAgcaGCGCCCGGAgcUCGUCg- -3' miRNA: 3'- -UCugUUUUac-CGCGGGUCU--AGCGGag -5' |
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28745 | 5' | -53.6 | NC_006146.1 | + | 99817 | 0.67 | 0.945062 |
Target: 5'- cGGCGAGggGGUGUUCGGG--GCCUCg -3' miRNA: 3'- uCUGUUUuaCCGCGGGUCUagCGGAG- -5' |
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28745 | 5' | -53.6 | NC_006146.1 | + | 89683 | 0.67 | 0.945062 |
Target: 5'- cGACGGAA-GGgGCCCGGGgaacgGCCUg -3' miRNA: 3'- uCUGUUUUaCCgCGGGUCUag---CGGAg -5' |
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28745 | 5' | -53.6 | NC_006146.1 | + | 15366 | 0.67 | 0.940416 |
Target: 5'- gGGugGGAucaGGCuaaCCCAaGUCGCCUCa -3' miRNA: 3'- -UCugUUUua-CCGc--GGGUcUAGCGGAG- -5' |
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28745 | 5' | -53.6 | NC_006146.1 | + | 24600 | 0.67 | 0.940416 |
Target: 5'- gGGugGGAucaGGCuaaCCCAaGUCGCCUCa -3' miRNA: 3'- -UCugUUUua-CCGc--GGGUcUAGCGGAG- -5' |
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28745 | 5' | -53.6 | NC_006146.1 | + | 18444 | 0.67 | 0.940416 |
Target: 5'- gGGugGGAucaGGCuaaCCCAaGUCGCCUCa -3' miRNA: 3'- -UCugUUUua-CCGc--GGGUcUAGCGGAG- -5' |
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28745 | 5' | -53.6 | NC_006146.1 | + | 27678 | 0.67 | 0.940416 |
Target: 5'- gGGugGGAucaGGCuaaCCCAaGUCGCCUCa -3' miRNA: 3'- -UCugUUUua-CCGc--GGGUcUAGCGGAG- -5' |
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28745 | 5' | -53.6 | NC_006146.1 | + | 21522 | 0.67 | 0.940416 |
Target: 5'- gGGugGGAucaGGCuaaCCCAaGUCGCCUCa -3' miRNA: 3'- -UCugUUUua-CCGc--GGGUcUAGCGGAG- -5' |
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28745 | 5' | -53.6 | NC_006146.1 | + | 12287 | 0.67 | 0.940416 |
Target: 5'- gGGugGGAucaGGCuaaCCCAaGUCGCCUCa -3' miRNA: 3'- -UCugUUUua-CCGc--GGGUcUAGCGGAG- -5' |
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28745 | 5' | -53.6 | NC_006146.1 | + | 23725 | 0.67 | 0.940415 |
Target: 5'- cGGGCGAAggGGCG-CCGGucugCGCCg- -3' miRNA: 3'- -UCUGUUUuaCCGCgGGUCua--GCGGag -5' |
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28745 | 5' | -53.6 | NC_006146.1 | + | 42709 | 0.67 | 0.935523 |
Target: 5'- cGGCGccgcGGCGCCCcccuGGGcCGCCUCc -3' miRNA: 3'- uCUGUuuuaCCGCGGG----UCUaGCGGAG- -5' |
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28745 | 5' | -53.6 | NC_006146.1 | + | 65211 | 0.67 | 0.929855 |
Target: 5'- gGGGCccuGGGAgcccgGGCGUCCAGAggugaccUCGCUUCc -3' miRNA: 3'- -UCUG---UUUUa----CCGCGGGUCU-------AGCGGAG- -5' |
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28745 | 5' | -53.6 | NC_006146.1 | + | 110924 | 0.68 | 0.924994 |
Target: 5'- aGGACAGcAUGGUcucguGCCCcugcuuUCGCCUCc -3' miRNA: 3'- -UCUGUUuUACCG-----CGGGucu---AGCGGAG- -5' |
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28745 | 5' | -53.6 | NC_006146.1 | + | 95612 | 0.68 | 0.924994 |
Target: 5'- uGGACGAGA--GCGuCCCGGA-CGCuCUCg -3' miRNA: 3'- -UCUGUUUUacCGC-GGGUCUaGCG-GAG- -5' |
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28745 | 5' | -53.6 | NC_006146.1 | + | 23040 | 0.68 | 0.924994 |
Target: 5'- cGGAagAAAGUGGCGCCU-GAucugcaacgUCGCCUUc -3' miRNA: 3'- -UCUg-UUUUACCGCGGGuCU---------AGCGGAG- -5' |
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28745 | 5' | -53.6 | NC_006146.1 | + | 43941 | 0.68 | 0.919356 |
Target: 5'- cGGGCGGGGUcuauccagacGCGCCCGGAgagCGCCa- -3' miRNA: 3'- -UCUGUUUUAc---------CGCGGGUCUa--GCGGag -5' |
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28745 | 5' | -53.6 | NC_006146.1 | + | 88259 | 0.68 | 0.913471 |
Target: 5'- cAGGCAAAAUccGGCGUgugCUGGGUCggGCCUCu -3' miRNA: 3'- -UCUGUUUUA--CCGCG---GGUCUAG--CGGAG- -5' |
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28745 | 5' | -53.6 | NC_006146.1 | + | 48640 | 0.68 | 0.913471 |
Target: 5'- cGGGCuccGGGcgGGUGCCCAG--CGCCUUc -3' miRNA: 3'- -UCUG---UUUuaCCGCGGGUCuaGCGGAG- -5' |
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28745 | 5' | -53.6 | NC_006146.1 | + | 67788 | 0.68 | 0.900961 |
Target: 5'- gGGACGuGAcGGCGgCCAGGcucugcccCGCCUCg -3' miRNA: 3'- -UCUGUuUUaCCGCgGGUCUa-------GCGGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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