Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28746 | 3' | -54.8 | NC_006146.1 | + | 16090 | 0.79 | 0.290212 |
Target: 5'- gGAUCGCcCGGGuCUCUGCUGGCAGAGu -3' miRNA: 3'- -CUAGCGaGUCU-GAGACGGUCGUCUCu -5' |
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28746 | 3' | -54.8 | NC_006146.1 | + | 13012 | 0.79 | 0.290212 |
Target: 5'- gGAUCGCcCGGGuCUCUGCUGGCAGAGu -3' miRNA: 3'- -CUAGCGaGUCU-GAGACGGUCGUCUCu -5' |
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28746 | 3' | -54.8 | NC_006146.1 | + | 142487 | 1.08 | 0.003965 |
Target: 5'- gGAUCGCUCAGACUCUGCCAGCAGAGAc -3' miRNA: 3'- -CUAGCGAGUCUGAGACGGUCGUCUCU- -5' |
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28746 | 3' | -54.8 | NC_006146.1 | + | 145565 | 1.08 | 0.003965 |
Target: 5'- gGAUCGCUCAGACUCUGCCAGCAGAGAc -3' miRNA: 3'- -CUAGCGAGUCUGAGACGGUCGUCUCU- -5' |
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28746 | 3' | -54.8 | NC_006146.1 | + | 148643 | 1.08 | 0.003965 |
Target: 5'- gGAUCGCUCAGACUCUGCCAGCAGAGAc -3' miRNA: 3'- -CUAGCGAGUCUGAGACGGUCGUCUCU- -5' |
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28746 | 3' | -54.8 | NC_006146.1 | + | 151720 | 1.08 | 0.003965 |
Target: 5'- gGAUCGCUCAGACUCUGCCAGCAGAGAc -3' miRNA: 3'- -CUAGCGAGUCUGAGACGGUCGUCUCU- -5' |
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28746 | 3' | -54.8 | NC_006146.1 | + | 154798 | 1.08 | 0.003965 |
Target: 5'- gGAUCGCUCAGACUCUGCCAGCAGAGAc -3' miRNA: 3'- -CUAGCGAGUCUGAGACGGUCGUCUCU- -5' |
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28746 | 3' | -54.8 | NC_006146.1 | + | 157876 | 1.08 | 0.003965 |
Target: 5'- gGAUCGCUCAGACUCUGCCAGCAGAGAc -3' miRNA: 3'- -CUAGCGAGUCUGAGACGGUCGUCUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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