miRNA display CGI


Results 21 - 40 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28746 5' -64.9 NC_006146.1 + 110437 0.77 0.128892
Target:  5'- gCCUCUcaCCGCUCCCCGcGGCCUGccgcucacucGGCCa -3'
miRNA:   3'- -GGGGA--GGUGAGGGGC-CCGGAU----------CCGGc -5'
28746 5' -64.9 NC_006146.1 + 119078 0.76 0.152381
Target:  5'- cCCCCUCCACgccgCCCCGgggaacggguGGCUUGGcGCCu -3'
miRNA:   3'- -GGGGAGGUGa---GGGGC----------CCGGAUC-CGGc -5'
28746 5' -64.9 NC_006146.1 + 137702 0.76 0.152381
Target:  5'- cCCCCUCCGgcCUCCCCccggGGuGCCcGGGCCu -3'
miRNA:   3'- -GGGGAGGU--GAGGGG----CC-CGGaUCCGGc -5'
28746 5' -64.9 NC_006146.1 + 26241 0.75 0.167491
Target:  5'- cCCCCUCCucucuccCUCCCCGaGGCCccGGCUc -3'
miRNA:   3'- -GGGGAGGu------GAGGGGC-CCGGauCCGGc -5'
28746 5' -64.9 NC_006146.1 + 20085 0.75 0.167491
Target:  5'- cCCCCUCCucucuccCUCCCCGaGGCCccGGCUc -3'
miRNA:   3'- -GGGGAGGu------GAGGGGC-CCGGauCCGGc -5'
28746 5' -64.9 NC_006146.1 + 23163 0.75 0.167491
Target:  5'- cCCCCUCCucucuccCUCCCCGaGGCCccGGCUc -3'
miRNA:   3'- -GGGGAGGu------GAGGGGC-CCGGauCCGGc -5'
28746 5' -64.9 NC_006146.1 + 17007 0.75 0.167491
Target:  5'- cCCCCUCCucucuccCUCCCCGaGGCCccGGCUc -3'
miRNA:   3'- -GGGGAGGu------GAGGGGC-CCGGauCCGGc -5'
28746 5' -64.9 NC_006146.1 + 54630 0.75 0.167491
Target:  5'- gCCUCUCUgguccggugGCUCCCCGGGCauuggagGGGCCc -3'
miRNA:   3'- -GGGGAGG---------UGAGGGGCCCGga-----UCCGGc -5'
28746 5' -64.9 NC_006146.1 + 13930 0.75 0.167491
Target:  5'- cCCCCUCCucucuccCUCCCCGaGGCCccGGCUc -3'
miRNA:   3'- -GGGGAGGu------GAGGGGC-CCGGauCCGGc -5'
28746 5' -64.9 NC_006146.1 + 29319 0.75 0.167491
Target:  5'- cCCCCUCCucucuccCUCCCCGaGGCCccGGCUc -3'
miRNA:   3'- -GGGGAGGu------GAGGGGC-CCGGauCCGGc -5'
28746 5' -64.9 NC_006146.1 + 121124 0.75 0.17969
Target:  5'- gCCCCUCCugagacacaucaGCcggCgUCUGGGCCUGGGCCGc -3'
miRNA:   3'- -GGGGAGG------------UGa--G-GGGCCCGGAUCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 117527 0.75 0.17969
Target:  5'- gUCUCacgCCuCUCCCUcgGGGCCUGGGCCGc -3'
miRNA:   3'- -GGGGa--GGuGAGGGG--CCCGGAUCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 129841 0.74 0.183929
Target:  5'- cUCCCUCCA--CCCCGaGGCCcccaGGGCCGc -3'
miRNA:   3'- -GGGGAGGUgaGGGGC-CCGGa---UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 76088 0.74 0.188256
Target:  5'- aCCUUCCuggugggcaAC-CCCCGGGCCUcGGCCu -3'
miRNA:   3'- gGGGAGG---------UGaGGGGCCCGGAuCCGGc -5'
28746 5' -64.9 NC_006146.1 + 53003 0.74 0.197179
Target:  5'- gCCCCUCUucuggCCCUGGGCCUcacgcggcuGGCCGc -3'
miRNA:   3'- -GGGGAGGuga--GGGGCCCGGAu--------CCGGC- -5'
28746 5' -64.9 NC_006146.1 + 55881 0.74 0.199007
Target:  5'- cCCCCUCCccuGCUCCCCGcuccaccagcuccacGGCCauGGCCu -3'
miRNA:   3'- -GGGGAGG---UGAGGGGC---------------CCGGauCCGGc -5'
28746 5' -64.9 NC_006146.1 + 74247 0.74 0.201777
Target:  5'- gCCCUgcgcggCCGuCUCCCCGGGCU--GGCCa -3'
miRNA:   3'- -GGGGa-----GGU-GAGGGGCCCGGauCCGGc -5'
28746 5' -64.9 NC_006146.1 + 47861 0.74 0.206468
Target:  5'- uCUCCUCCAg-CgCCCGGaCCUGGGCCGc -3'
miRNA:   3'- -GGGGAGGUgaG-GGGCCcGGAUCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 2077 0.73 0.216134
Target:  5'- gCCC-CCGCgagggUCCCCGGGCCgccccgGGGCUc -3'
miRNA:   3'- gGGGaGGUG-----AGGGGCCCGGa-----UCCGGc -5'
28746 5' -64.9 NC_006146.1 + 1145 0.73 0.216134
Target:  5'- gCCC-CCGCgagggUCCCCGGGCCgccccgGGGCUc -3'
miRNA:   3'- gGGGaGGUG-----AGGGGCCCGGa-----UCCGGc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.