miRNA display CGI


Results 41 - 60 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28746 5' -64.9 NC_006146.1 + 2077 0.73 0.216134
Target:  5'- gCCC-CCGCgagggUCCCCGGGCCgccccgGGGCUc -3'
miRNA:   3'- gGGGaGGUG-----AGGGGCCCGGa-----UCCGGc -5'
28746 5' -64.9 NC_006146.1 + 3009 0.73 0.216134
Target:  5'- gCCC-CCGCgagggUCCCCGGGCCgccccgGGGCUc -3'
miRNA:   3'- gGGGaGGUG-----AGGGGCCCGGa-----UCCGGc -5'
28746 5' -64.9 NC_006146.1 + 156056 0.73 0.221111
Target:  5'- cCCCCUCgGCcUCCCGcGGCCccGGGCCc -3'
miRNA:   3'- -GGGGAGgUGaGGGGC-CCGGa-UCCGGc -5'
28746 5' -64.9 NC_006146.1 + 24395 0.73 0.226185
Target:  5'- gCgCCUUCGCUCUCCGGGUUUacguuccaggAGGCCGc -3'
miRNA:   3'- -GgGGAGGUGAGGGGCCCGGA----------UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 22913 0.73 0.229276
Target:  5'- cCCCCUCCACcccagucccccccCCCCGcuuucGGCCUcucgguccaccAGGCCGg -3'
miRNA:   3'- -GGGGAGGUGa------------GGGGC-----CCGGA-----------UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 13679 0.73 0.234508
Target:  5'- cCCCCUCCACcccagucccccccCCCCGcuuucGGCCUcucggguccaccAGGCCGg -3'
miRNA:   3'- -GGGGAGGUGa------------GGGGC-----CCGGA------------UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 16757 0.73 0.234508
Target:  5'- cCCCCUCCACcccagucccccccCCCCGcuuucGGCCUcucggguccaccAGGCCGg -3'
miRNA:   3'- -GGGGAGGUGa------------GGGGC-----CCGGA------------UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 25990 0.73 0.234508
Target:  5'- cCCCCUCCACcccagucccccccCCCCGcuuucGGCCUcucggguccaccAGGCCGg -3'
miRNA:   3'- -GGGGAGGUGa------------GGGGC-----CCGGA------------UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 19835 0.73 0.234508
Target:  5'- cCCCCUCCACcccagucccccccCCCCGcuuucGGCCUcucggguccaccAGGCCGg -3'
miRNA:   3'- -GGGGAGGUGa------------GGGGC-----CCGGA------------UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 29068 0.73 0.234508
Target:  5'- cCCCCUCCACcccagucccccccCCCCGcuuucGGCCUcucggguccaccAGGCCGg -3'
miRNA:   3'- -GGGGAGGUGa------------GGGGC-----CCGGA------------UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 118082 0.73 0.236629
Target:  5'- gCCCUCCGCaUCCUGGGCac-GGCCu -3'
miRNA:   3'- gGGGAGGUGaGGGGCCCGgauCCGGc -5'
28746 5' -64.9 NC_006146.1 + 41044 0.73 0.242001
Target:  5'- cCCCCgUCCGCggcggCCCUggGGGCCUcgggguggagggAGGCCa -3'
miRNA:   3'- -GGGG-AGGUGa----GGGG--CCCGGA------------UCCGGc -5'
28746 5' -64.9 NC_006146.1 + 127827 0.72 0.253049
Target:  5'- uCCgCCUCCAgcCUCCCCuggaggguGGGCUUGGGCa- -3'
miRNA:   3'- -GG-GGAGGU--GAGGGG--------CCCGGAUCCGgc -5'
28746 5' -64.9 NC_006146.1 + 11837 0.72 0.253049
Target:  5'- aCCCCUugcgccgggccCUGCUUCUCGGGCUUGGGgCGg -3'
miRNA:   3'- -GGGGA-----------GGUGAGGGGCCCGGAUCCgGC- -5'
28746 5' -64.9 NC_006146.1 + 46388 0.72 0.258727
Target:  5'- cCCCCgUCC-CUCgCCaGGGCCgagaccAGGCCGa -3'
miRNA:   3'- -GGGG-AGGuGAGgGG-CCCGGa-----UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 123174 0.72 0.270395
Target:  5'- gCCCCUCCAagacCUCCCCaaucucgaGGGCCgagcacAGGgCGg -3'
miRNA:   3'- -GGGGAGGU----GAGGGG--------CCCGGa-----UCCgGC- -5'
28746 5' -64.9 NC_006146.1 + 13811 0.72 0.276387
Target:  5'- cCCCCUCagcuuguCUCCCCaccGGGUCcaucAGGCCGg -3'
miRNA:   3'- -GGGGAGgu-----GAGGGG---CCCGGa---UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 19966 0.72 0.276387
Target:  5'- cCCCCUCagcuuguCUCCCCaccGGGUCcaucAGGCCGg -3'
miRNA:   3'- -GGGGAGgu-----GAGGGG---CCCGGa---UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 16889 0.72 0.276387
Target:  5'- cCCCCUCagcuuguCUCCCCaccGGGUCcaucAGGCCGg -3'
miRNA:   3'- -GGGGAGgu-----GAGGGG---CCCGGa---UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 23044 0.72 0.276387
Target:  5'- cCCCCUCagcuuguCUCCCCaccGGGUCcaucAGGCCGg -3'
miRNA:   3'- -GGGGAGgu-----GAGGGG---CCCGGa---UCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.