miRNA display CGI


Results 61 - 80 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28746 5' -64.9 NC_006146.1 + 19966 0.72 0.276387
Target:  5'- cCCCCUCagcuuguCUCCCCaccGGGUCcaucAGGCCGg -3'
miRNA:   3'- -GGGGAGgu-----GAGGGG---CCCGGa---UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 23044 0.72 0.276387
Target:  5'- cCCCCUCagcuuguCUCCCCaccGGGUCcaucAGGCCGg -3'
miRNA:   3'- -GGGGAGgu-----GAGGGG---CCCGGa---UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 29200 0.72 0.276387
Target:  5'- cCCCCUCagcuuguCUCCCCaccGGGUCcaucAGGCCGg -3'
miRNA:   3'- -GGGGAGgu-----GAGGGG---CCCGGa---UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 119317 0.71 0.282483
Target:  5'- gCCCCUCUgGCUcCCCCGGGCCccucccGGCgGc -3'
miRNA:   3'- -GGGGAGG-UGA-GGGGCCCGGau----CCGgC- -5'
28746 5' -64.9 NC_006146.1 + 126786 0.71 0.282483
Target:  5'- cCCCCUCC--UCgCCGGGCagccgGGGCCu -3'
miRNA:   3'- -GGGGAGGugAGgGGCCCGga---UCCGGc -5'
28746 5' -64.9 NC_006146.1 + 114703 0.71 0.282483
Target:  5'- gCUCgUCCGCgagaCCCGGGCCcuggcGGCCGa -3'
miRNA:   3'- -GGGgAGGUGag--GGGCCCGGau---CCGGC- -5'
28746 5' -64.9 NC_006146.1 + 17954 0.71 0.288686
Target:  5'- gCCCUCCAggCCuCCGaGGCCccAGGCCu -3'
miRNA:   3'- gGGGAGGUgaGG-GGC-CCGGa-UCCGGc -5'
28746 5' -64.9 NC_006146.1 + 106668 0.71 0.294995
Target:  5'- gCCgUCCuCUCCCCGGGCaCgggaucccugGGGCUGu -3'
miRNA:   3'- gGGgAGGuGAGGGGCCCG-Ga---------UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 158149 0.71 0.301411
Target:  5'- gCCCgccggCUCCAa-CCUCGGGCCUcuGGGCUGg -3'
miRNA:   3'- -GGG-----GAGGUgaGGGGCCCGGA--UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 155070 0.71 0.301411
Target:  5'- gCCCgccggCUCCAa-CCUCGGGCCUcuGGGCUGg -3'
miRNA:   3'- -GGG-----GAGGUgaGGGGCCCGGA--UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 151992 0.71 0.301411
Target:  5'- gCCCgccggCUCCAa-CCUCGGGCCUcuGGGCUGg -3'
miRNA:   3'- -GGG-----GAGGUgaGGGGCCCGGA--UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 148914 0.71 0.301411
Target:  5'- gCCCgccggCUCCAa-CCUCGGGCCUcuGGGCUGg -3'
miRNA:   3'- -GGG-----GAGGUgaGGGGCCCGGA--UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 145836 0.71 0.301411
Target:  5'- gCCCgccggCUCCAa-CCUCGGGCCUcuGGGCUGg -3'
miRNA:   3'- -GGG-----GAGGUgaGGGGCCCGGA--UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 142758 0.71 0.301411
Target:  5'- gCCCgccggCUCCAa-CCUCGGGCCUcuGGGCUGg -3'
miRNA:   3'- -GGG-----GAGGUgaGGGGCCCGGA--UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 63348 0.71 0.301411
Target:  5'- uUCUUCCACgaagCCCUGGGaccCCUGGGCaCGa -3'
miRNA:   3'- gGGGAGGUGa---GGGGCCC---GGAUCCG-GC- -5'
28746 5' -64.9 NC_006146.1 + 62820 0.71 0.301411
Target:  5'- gCCUCUCUugUgCCUGuGGCCcAGGCUGg -3'
miRNA:   3'- -GGGGAGGugAgGGGC-CCGGaUCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 135387 0.71 0.305967
Target:  5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3'
miRNA:   3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 135480 0.71 0.305967
Target:  5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3'
miRNA:   3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 135294 0.71 0.305967
Target:  5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3'
miRNA:   3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 135201 0.71 0.305967
Target:  5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3'
miRNA:   3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.