miRNA display CGI


Results 61 - 80 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28746 5' -64.9 NC_006146.1 + 20085 0.75 0.167491
Target:  5'- cCCCCUCCucucuccCUCCCCGaGGCCccGGCUc -3'
miRNA:   3'- -GGGGAGGu------GAGGGGC-CCGGauCCGGc -5'
28746 5' -64.9 NC_006146.1 + 20187 0.7 0.335101
Target:  5'- gCCCCgUCCACccugUCCCCcgcaGGCC-AGGCCc -3'
miRNA:   3'- -GGGG-AGGUG----AGGGGc---CCGGaUCCGGc -5'
28746 5' -64.9 NC_006146.1 + 20239 0.68 0.43498
Target:  5'- uCCCCaCCcCUCCCCGGccacCCcAGGCCc -3'
miRNA:   3'- -GGGGaGGuGAGGGGCCc---GGaUCCGGc -5'
28746 5' -64.9 NC_006146.1 + 20353 0.67 0.51336
Target:  5'- cCCCCUuuGC-CCCCuGGC--AGGCCa -3'
miRNA:   3'- -GGGGAggUGaGGGGcCCGgaUCCGGc -5'
28746 5' -64.9 NC_006146.1 + 20946 0.7 0.356599
Target:  5'- gCCC-CCACUCCCac-GCCUGGGCg- -3'
miRNA:   3'- gGGGaGGUGAGGGgccCGGAUCCGgc -5'
28746 5' -64.9 NC_006146.1 + 21031 0.69 0.394532
Target:  5'- gCCCUCCagGCcCUCCGaGGCCccAGGCCu -3'
miRNA:   3'- gGGGAGG--UGaGGGGC-CCGGa-UCCGGc -5'
28746 5' -64.9 NC_006146.1 + 21183 0.66 0.559337
Target:  5'- aCCUUCCAgg-CCCGGGCCcccaggucucGGGCCa -3'
miRNA:   3'- gGGGAGGUgagGGGCCCGGa---------UCCGGc -5'
28746 5' -64.9 NC_006146.1 + 21577 0.77 0.122822
Target:  5'- uCCCCU-CGC-CCCUGGGCCUcAGGCCc -3'
miRNA:   3'- -GGGGAgGUGaGGGGCCCGGA-UCCGGc -5'
28746 5' -64.9 NC_006146.1 + 21600 0.66 0.553751
Target:  5'- -nCCUCCGCgUCCCCguccuccagagucacGGGCUacAGGCCc -3'
miRNA:   3'- ggGGAGGUG-AGGGG---------------CCCGGa-UCCGGc -5'
28746 5' -64.9 NC_006146.1 + 22281 0.69 0.41042
Target:  5'- aUCCUCCGagaCUCCGGGCCccaaggcGGCCGc -3'
miRNA:   3'- gGGGAGGUga-GGGGCCCGGau-----CCGGC- -5'
28746 5' -64.9 NC_006146.1 + 22650 0.71 0.321303
Target:  5'- -aCCUCagggugcCUCCCCGGGuCCcAGGCCa -3'
miRNA:   3'- ggGGAGgu-----GAGGGGCCC-GGaUCCGGc -5'
28746 5' -64.9 NC_006146.1 + 22913 0.73 0.229276
Target:  5'- cCCCCUCCACcccagucccccccCCCCGcuuucGGCCUcucgguccaccAGGCCGg -3'
miRNA:   3'- -GGGGAGGUGa------------GGGGC-----CCGGA-----------UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 23044 0.72 0.276387
Target:  5'- cCCCCUCagcuuguCUCCCCaccGGGUCcaucAGGCCGg -3'
miRNA:   3'- -GGGGAGgu-----GAGGGG---CCCGGa---UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 23163 0.75 0.167491
Target:  5'- cCCCCUCCucucuccCUCCCCGaGGCCccGGCUc -3'
miRNA:   3'- -GGGGAGGu------GAGGGGC-CCGGauCCGGc -5'
28746 5' -64.9 NC_006146.1 + 23265 0.7 0.335101
Target:  5'- gCCCCgUCCACccugUCCCCcgcaGGCC-AGGCCc -3'
miRNA:   3'- -GGGG-AGGUG----AGGGGc---CCGGaUCCGGc -5'
28746 5' -64.9 NC_006146.1 + 23317 0.68 0.43498
Target:  5'- uCCCCaCCcCUCCCCGGccacCCcAGGCCc -3'
miRNA:   3'- -GGGGaGGuGAGGGGCCc---GGaUCCGGc -5'
28746 5' -64.9 NC_006146.1 + 23431 0.67 0.51336
Target:  5'- cCCCCUuuGC-CCCCuGGC--AGGCCa -3'
miRNA:   3'- -GGGGAggUGaGGGGcCCGgaUCCGGc -5'
28746 5' -64.9 NC_006146.1 + 23933 0.67 0.47685
Target:  5'- gCCCCUCCugccccaagggcgGCgacuuuccCCCCGGGUCgggugggGGaGCCGg -3'
miRNA:   3'- -GGGGAGG-------------UGa-------GGGGCCCGGa------UC-CGGC- -5'
28746 5' -64.9 NC_006146.1 + 24109 0.69 0.394532
Target:  5'- gCCCUCCagGCcCUCCGaGGCCccAGGCCu -3'
miRNA:   3'- gGGGAGG--UGaGGGGC-CCGGa-UCCGGc -5'
28746 5' -64.9 NC_006146.1 + 24261 0.66 0.559337
Target:  5'- aCCUUCCAgg-CCCGGGCCcccaggucucGGGCCa -3'
miRNA:   3'- gGGGAGGUgagGGGCCCGGa---------UCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.