miRNA display CGI


Results 41 - 60 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28746 5' -64.9 NC_006146.1 + 110437 0.77 0.128892
Target:  5'- gCCUCUcaCCGCUCCCCGcGGCCUGccgcucacucGGCCa -3'
miRNA:   3'- -GGGGA--GGUGAGGGGC-CCGGAU----------CCGGc -5'
28746 5' -64.9 NC_006146.1 + 126786 0.71 0.282483
Target:  5'- cCCCCUCC--UCgCCGGGCagccgGGGCCu -3'
miRNA:   3'- -GGGGAGGugAGgGGCCCGga---UCCGGc -5'
28746 5' -64.9 NC_006146.1 + 136595 0.71 0.305967
Target:  5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3'
miRNA:   3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 136223 0.71 0.305967
Target:  5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3'
miRNA:   3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 35586 0.72 0.276387
Target:  5'- uCCCCUcagagCCAUUCCCCuGGGUCUguGGGCa- -3'
miRNA:   3'- -GGGGA-----GGUGAGGGG-CCCGGA--UCCGgc -5'
28746 5' -64.9 NC_006146.1 + 117527 0.75 0.17969
Target:  5'- gUCUCacgCCuCUCCCUcgGGGCCUGGGCCGc -3'
miRNA:   3'- -GGGGa--GGuGAGGGG--CCCGGAUCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 27733 0.77 0.122822
Target:  5'- uCCCCU-CGC-CCCUGGGCCUcAGGCCc -3'
miRNA:   3'- -GGGGAgGUGaGGGGCCCGGA-UCCGGc -5'
28746 5' -64.9 NC_006146.1 + 24655 0.77 0.122822
Target:  5'- uCCCCU-CGC-CCCUGGGCCUcAGGCCc -3'
miRNA:   3'- -GGGGAgGUGaGGGGCCCGGA-UCCGGc -5'
28746 5' -64.9 NC_006146.1 + 49237 0.73 0.216134
Target:  5'- gCCCUCCugcAC-CUCCGGGuCCaGGGCCGg -3'
miRNA:   3'- gGGGAGG---UGaGGGGCCC-GGaUCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 123174 0.72 0.270395
Target:  5'- gCCCCUCCAagacCUCCCCaaucucgaGGGCCgagcacAGGgCGg -3'
miRNA:   3'- -GGGGAGGU----GAGGGG--------CCCGGa-----UCCgGC- -5'
28746 5' -64.9 NC_006146.1 + 29068 0.73 0.234508
Target:  5'- cCCCCUCCACcccagucccccccCCCCGcuuucGGCCUcucggguccaccAGGCCGg -3'
miRNA:   3'- -GGGGAGGUGa------------GGGGC-----CCGGA------------UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 55881 0.74 0.199007
Target:  5'- cCCCCUCCccuGCUCCCCGcuccaccagcuccacGGCCauGGCCu -3'
miRNA:   3'- -GGGGAGG---UGAGGGGC---------------CCGGauCCGGc -5'
28746 5' -64.9 NC_006146.1 + 13930 0.75 0.167491
Target:  5'- cCCCCUCCucucuccCUCCCCGaGGCCccGGCUc -3'
miRNA:   3'- -GGGGAGGu------GAGGGGC-CCGGauCCGGc -5'
28746 5' -64.9 NC_006146.1 + 135480 0.71 0.305967
Target:  5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3'
miRNA:   3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 135294 0.71 0.305967
Target:  5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3'
miRNA:   3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 26122 0.72 0.276387
Target:  5'- cCCCCUCagcuuguCUCCCCaccGGGUCcaucAGGCCGg -3'
miRNA:   3'- -GGGGAGgu-----GAGGGG---CCCGGa---UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 136037 0.71 0.305967
Target:  5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3'
miRNA:   3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 41322 0.66 0.590311
Target:  5'- gUCCCUCCcuguuucGCgCCCCaaccuaucuggcccaGGGCCUGgcggugguGGCCGu -3'
miRNA:   3'- -GGGGAGG-------UGaGGGG---------------CCCGGAU--------CCGGC- -5'
28746 5' -64.9 NC_006146.1 + 136780 0.71 0.305967
Target:  5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3'
miRNA:   3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 135851 0.71 0.305967
Target:  5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3'
miRNA:   3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.