miRNA display CGI


Results 41 - 60 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28746 5' -64.9 NC_006146.1 + 3619 0.66 0.538018
Target:  5'- gCCCCUCCcgccggccauccccACgcgcggCCCCGGGCCcuccCCGa -3'
miRNA:   3'- -GGGGAGG--------------UGa-----GGGGCCCGGauccGGC- -5'
28746 5' -64.9 NC_006146.1 + 130440 0.66 0.587481
Target:  5'- cCCCCUUCAC-CCaCCaGGCCauuGCCGc -3'
miRNA:   3'- -GGGGAGGUGaGG-GGcCCGGaucCGGC- -5'
28746 5' -64.9 NC_006146.1 + 1755 0.66 0.538018
Target:  5'- gCCCCUCCcgccggccauccccACgcgcggCCCCGGGCCcuccCCGa -3'
miRNA:   3'- -GGGGAGG--------------UGa-----GGGGCCCGGauccGGC- -5'
28746 5' -64.9 NC_006146.1 + 12365 0.66 0.553751
Target:  5'- -nCCUCCGCgUCCCCguccuccagagucacGGGCUacAGGCCc -3'
miRNA:   3'- ggGGAGGUG-AGGGG---------------CCCGGa-UCCGGc -5'
28746 5' -64.9 NC_006146.1 + 41322 0.66 0.590311
Target:  5'- gUCCCUCCcuguuucGCgCCCCaaccuaucuggcccaGGGCCUGgcggugguGGCCGu -3'
miRNA:   3'- -GGGGAGG-------UGaGGGG---------------CCCGGAU--------CCGGC- -5'
28746 5' -64.9 NC_006146.1 + 153292 0.66 0.568682
Target:  5'- gCCUuuUCUGCUCCaggcaccaggcCCGGGCC-AGGUCGc -3'
miRNA:   3'- gGGG--AGGUGAGG-----------GGCCCGGaUCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 35299 0.66 0.578065
Target:  5'- gCCCCgggguugCCugUCUuagcacuaacuCCGGGCCUgaagAGGuuGa -3'
miRNA:   3'- -GGGGa------GGugAGG-----------GGCCCGGA----UCCggC- -5'
28746 5' -64.9 NC_006146.1 + 144722 0.66 0.578065
Target:  5'- cCCCCUCCGaccuaaUCCCCu--CC-AGGCCGc -3'
miRNA:   3'- -GGGGAGGUg-----AGGGGcccGGaUCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 56058 0.66 0.550036
Target:  5'- gCCCCUCCcgcgggaagGCgucCCaCCGGGCCaagUAGGUg- -3'
miRNA:   3'- -GGGGAGG---------UGa--GG-GGCCCGG---AUCCGgc -5'
28746 5' -64.9 NC_006146.1 + 27756 0.66 0.553751
Target:  5'- -nCCUCCGCgUCCCCguccuccagagucacGGGCUacAGGCCc -3'
miRNA:   3'- ggGGAGGUG-AGGGG---------------CCCGGa-UCCGGc -5'
28746 5' -64.9 NC_006146.1 + 21183 0.66 0.559337
Target:  5'- aCCUUCCAgg-CCCGGGCCcccaggucucGGGCCa -3'
miRNA:   3'- gGGGAGGUgagGGGCCCGGa---------UCCGGc -5'
28746 5' -64.9 NC_006146.1 + 27339 0.66 0.559337
Target:  5'- aCCUUCCAgg-CCCGGGCCcccaggucucGGGCCa -3'
miRNA:   3'- gGGGAGGUgagGGGCCCGGa---------UCCGGc -5'
28746 5' -64.9 NC_006146.1 + 138853 0.66 0.559337
Target:  5'- gCUCgCCACg-CCCGGGucaugaCCUGGGCCa -3'
miRNA:   3'- gGGGaGGUGagGGGCCC------GGAUCCGGc -5'
28746 5' -64.9 NC_006146.1 + 9151 0.66 0.549109
Target:  5'- cCCCCUcggaccucagccgCCAC-CCCCGGGCUacaaGGGUUc -3'
miRNA:   3'- -GGGGA-------------GGUGaGGGGCCCGGa---UCCGGc -5'
28746 5' -64.9 NC_006146.1 + 823 0.66 0.538018
Target:  5'- gCCCCUCCcgccggccauccccACgcgcggCCCCGGGCCcuccCCGa -3'
miRNA:   3'- -GGGGAGG--------------UGa-----GGGGCCCGGauccGGC- -5'
28746 5' -64.9 NC_006146.1 + 136549 0.67 0.510648
Target:  5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3'
miRNA:   3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 136456 0.67 0.510648
Target:  5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3'
miRNA:   3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 136270 0.67 0.510648
Target:  5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3'
miRNA:   3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 136177 0.67 0.510648
Target:  5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3'
miRNA:   3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 33026 0.67 0.495397
Target:  5'- cCCCCUgCCGg-CCCgGGGCg-GGGCCc -3'
miRNA:   3'- -GGGGA-GGUgaGGGgCCCGgaUCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.