miRNA display CGI


Results 81 - 100 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28746 5' -64.9 NC_006146.1 + 69219 0.67 0.535257
Target:  5'- cCCCCUCUagcGCcgcccguagcccguuUCCCCccaGGGCC-AGGuCCGg -3'
miRNA:   3'- -GGGGAGG---UG---------------AGGGG---CCCGGaUCC-GGC- -5'
28746 5' -64.9 NC_006146.1 + 47750 0.67 0.477725
Target:  5'- cCUCCUCgCGCgCCCUGgcgaguacGGCCUccaGGGCCGu -3'
miRNA:   3'- -GGGGAG-GUGaGGGGC--------CCGGA---UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 55364 0.67 0.486523
Target:  5'- cCCCCgccaCCGCgcgcgggacgCCCgGGGCaccgAGGCCa -3'
miRNA:   3'- -GGGGa---GGUGa---------GGGgCCCGga--UCCGGc -5'
28746 5' -64.9 NC_006146.1 + 119737 0.67 0.495397
Target:  5'- cCCCUUCCACaCCCacagCGGcGCCUcuGCCGc -3'
miRNA:   3'- -GGGGAGGUGaGGG----GCC-CGGAucCGGC- -5'
28746 5' -64.9 NC_006146.1 + 135341 0.67 0.510648
Target:  5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3'
miRNA:   3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 135620 0.67 0.510648
Target:  5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3'
miRNA:   3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 135805 0.67 0.510648
Target:  5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3'
miRNA:   3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 135434 0.67 0.510648
Target:  5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3'
miRNA:   3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 135898 0.67 0.510648
Target:  5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3'
miRNA:   3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 135527 0.67 0.510648
Target:  5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3'
miRNA:   3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 136827 0.67 0.510648
Target:  5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3'
miRNA:   3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 136549 0.67 0.510648
Target:  5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3'
miRNA:   3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 136642 0.67 0.510648
Target:  5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3'
miRNA:   3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 136363 0.67 0.510648
Target:  5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3'
miRNA:   3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 136084 0.67 0.510648
Target:  5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3'
miRNA:   3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 163784 0.67 0.522441
Target:  5'- aUCCUCUaguuaguauGCagCCUGGGCCUuggcGGGCCa -3'
miRNA:   3'- gGGGAGG---------UGagGGGCCCGGA----UCCGGc -5'
28746 5' -64.9 NC_006146.1 + 135991 0.67 0.510648
Target:  5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3'
miRNA:   3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 136456 0.67 0.510648
Target:  5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3'
miRNA:   3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 23431 0.67 0.51336
Target:  5'- cCCCCUuuGC-CCCCuGGC--AGGCCa -3'
miRNA:   3'- -GGGGAggUGaGGGGcCCGgaUCCGGc -5'
28746 5' -64.9 NC_006146.1 + 136270 0.67 0.510648
Target:  5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3'
miRNA:   3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.