Results 81 - 100 of 314 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28746 | 5' | -64.9 | NC_006146.1 | + | 69219 | 0.67 | 0.535257 |
Target: 5'- cCCCCUCUagcGCcgcccguagcccguuUCCCCccaGGGCC-AGGuCCGg -3' miRNA: 3'- -GGGGAGG---UG---------------AGGGG---CCCGGaUCC-GGC- -5' |
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28746 | 5' | -64.9 | NC_006146.1 | + | 47750 | 0.67 | 0.477725 |
Target: 5'- cCUCCUCgCGCgCCCUGgcgaguacGGCCUccaGGGCCGu -3' miRNA: 3'- -GGGGAG-GUGaGGGGC--------CCGGA---UCCGGC- -5' |
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28746 | 5' | -64.9 | NC_006146.1 | + | 55364 | 0.67 | 0.486523 |
Target: 5'- cCCCCgccaCCGCgcgcgggacgCCCgGGGCaccgAGGCCa -3' miRNA: 3'- -GGGGa---GGUGa---------GGGgCCCGga--UCCGGc -5' |
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28746 | 5' | -64.9 | NC_006146.1 | + | 119737 | 0.67 | 0.495397 |
Target: 5'- cCCCUUCCACaCCCacagCGGcGCCUcuGCCGc -3' miRNA: 3'- -GGGGAGGUGaGGG----GCC-CGGAucCGGC- -5' |
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28746 | 5' | -64.9 | NC_006146.1 | + | 135341 | 0.67 | 0.510648 |
Target: 5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3' miRNA: 3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5' |
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28746 | 5' | -64.9 | NC_006146.1 | + | 135620 | 0.67 | 0.510648 |
Target: 5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3' miRNA: 3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5' |
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28746 | 5' | -64.9 | NC_006146.1 | + | 135805 | 0.67 | 0.510648 |
Target: 5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3' miRNA: 3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5' |
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28746 | 5' | -64.9 | NC_006146.1 | + | 135434 | 0.67 | 0.510648 |
Target: 5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3' miRNA: 3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5' |
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28746 | 5' | -64.9 | NC_006146.1 | + | 135898 | 0.67 | 0.510648 |
Target: 5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3' miRNA: 3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5' |
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28746 | 5' | -64.9 | NC_006146.1 | + | 135527 | 0.67 | 0.510648 |
Target: 5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3' miRNA: 3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5' |
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28746 | 5' | -64.9 | NC_006146.1 | + | 136827 | 0.67 | 0.510648 |
Target: 5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3' miRNA: 3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5' |
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28746 | 5' | -64.9 | NC_006146.1 | + | 136549 | 0.67 | 0.510648 |
Target: 5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3' miRNA: 3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5' |
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28746 | 5' | -64.9 | NC_006146.1 | + | 136642 | 0.67 | 0.510648 |
Target: 5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3' miRNA: 3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5' |
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28746 | 5' | -64.9 | NC_006146.1 | + | 136363 | 0.67 | 0.510648 |
Target: 5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3' miRNA: 3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5' |
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28746 | 5' | -64.9 | NC_006146.1 | + | 136084 | 0.67 | 0.510648 |
Target: 5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3' miRNA: 3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5' |
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28746 | 5' | -64.9 | NC_006146.1 | + | 163784 | 0.67 | 0.522441 |
Target: 5'- aUCCUCUaguuaguauGCagCCUGGGCCUuggcGGGCCa -3' miRNA: 3'- gGGGAGG---------UGagGGGCCCGGA----UCCGGc -5' |
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28746 | 5' | -64.9 | NC_006146.1 | + | 135991 | 0.67 | 0.510648 |
Target: 5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3' miRNA: 3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5' |
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28746 | 5' | -64.9 | NC_006146.1 | + | 136456 | 0.67 | 0.510648 |
Target: 5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3' miRNA: 3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5' |
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28746 | 5' | -64.9 | NC_006146.1 | + | 23431 | 0.67 | 0.51336 |
Target: 5'- cCCCCUuuGC-CCCCuGGC--AGGCCa -3' miRNA: 3'- -GGGGAggUGaGGGGcCCGgaUCCGGc -5' |
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28746 | 5' | -64.9 | NC_006146.1 | + | 136270 | 0.67 | 0.510648 |
Target: 5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3' miRNA: 3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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