miRNA display CGI


Results 21 - 40 of 134 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28747 5' -59.9 NC_006146.1 + 94803 0.9 0.02898
Target:  5'- -cGUAGGCCAGGCCCGGGGGUUGCCc -3'
miRNA:   3'- acCAUUCGGUCCGGGCUCCCAGUGGa -5'
28747 5' -59.9 NC_006146.1 + 22115 0.68 0.649509
Target:  5'- gGGcAGGCCGGGUCUcgggucuGGGGGUCugUg -3'
miRNA:   3'- aCCaUUCGGUCCGGG-------CUCCCAGugGa -5'
28747 5' -59.9 NC_006146.1 + 19037 0.68 0.649509
Target:  5'- gGGcAGGCCGGGUCUcgggucuGGGGGUCugUg -3'
miRNA:   3'- aCCaUUCGGUCCGGG-------CUCCCAGugGa -5'
28747 5' -59.9 NC_006146.1 + 33749 0.69 0.590792
Target:  5'- cGGUGGGUguGGUCCGcuGGGUcCGCUg -3'
miRNA:   3'- aCCAUUCGguCCGGGCu-CCCA-GUGGa -5'
28747 5' -59.9 NC_006146.1 + 34073 0.7 0.494122
Target:  5'- gUGGcacgGGGCCGGGgguCCCGGGGGgcaGCCg -3'
miRNA:   3'- -ACCa---UUCGGUCC---GGGCUCCCag-UGGa -5'
28747 5' -59.9 NC_006146.1 + 50531 0.67 0.670376
Target:  5'- aGGUcagGAGCCgcuccAGGuCCCGGGuGGgCACCUg -3'
miRNA:   3'- aCCA---UUCGG-----UCC-GGGCUC-CCaGUGGA- -5'
28747 5' -59.9 NC_006146.1 + 28271 0.68 0.649509
Target:  5'- gGGcAGGCCGGGUCUcgggucuGGGGGUCugUg -3'
miRNA:   3'- aCCaUUCGGUCCGGG-------CUCCCAGugGa -5'
28747 5' -59.9 NC_006146.1 + 41402 0.71 0.475608
Target:  5'- aGGUGGGCCugauguccGCCUGGGGGgCACCc -3'
miRNA:   3'- aCCAUUCGGuc------CGGGCUCCCaGUGGa -5'
28747 5' -59.9 NC_006146.1 + 167181 0.68 0.640544
Target:  5'- cGGgaGGCCGGcgcgcGCCCG-GGGUC-CCg -3'
miRNA:   3'- aCCauUCGGUC-----CGGGCuCCCAGuGGa -5'
28747 5' -59.9 NC_006146.1 + 126062 0.68 0.630577
Target:  5'- gGGUAGGguaaaCGGGCaCGAGGGgCGCCg -3'
miRNA:   3'- aCCAUUCg----GUCCGgGCUCCCaGUGGa -5'
28747 5' -59.9 NC_006146.1 + 33547 0.71 0.439661
Target:  5'- cGGcuuGCCuGGCCCuggugcuccuccGGGGGUCGCCg -3'
miRNA:   3'- aCCauuCGGuCCGGG------------CUCCCAGUGGa -5'
28747 5' -59.9 NC_006146.1 + 116097 0.72 0.388786
Target:  5'- aUGGUGgcGGCCA--CCCGAGGGUCcCCg -3'
miRNA:   3'- -ACCAU--UCGGUccGGGCUCCCAGuGGa -5'
28747 5' -59.9 NC_006146.1 + 40733 0.67 0.7097
Target:  5'- cGGgcAGgCGGGCCCGugcuuGGGGcUgGCCa -3'
miRNA:   3'- aCCauUCgGUCCGGGC-----UCCC-AgUGGa -5'
28747 5' -59.9 NC_006146.1 + 106140 0.67 0.699942
Target:  5'- gGGUGagagcuccaaGGCCAGGCUCGAGaaGUCAUa- -3'
miRNA:   3'- aCCAU----------UCGGUCCGGGCUCc-CAGUGga -5'
28747 5' -59.9 NC_006146.1 + 12882 0.68 0.649509
Target:  5'- gGGcAGGCCGGGUCUcgggucuGGGGGUCugUg -3'
miRNA:   3'- aCCaUUCGGUCCGGG-------CUCCCAGugGa -5'
28747 5' -59.9 NC_006146.1 + 161068 0.7 0.512959
Target:  5'- gGGUGAGCCuaGGGCCCGAGa-UCAUg- -3'
miRNA:   3'- aCCAUUCGG--UCCGGGCUCccAGUGga -5'
28747 5' -59.9 NC_006146.1 + 33967 0.7 0.512959
Target:  5'- gGGUGGGCguGGUCCGcuGGGUcCGCUg -3'
miRNA:   3'- aCCAUUCGguCCGGGCu-CCCA-GUGGa -5'
28747 5' -59.9 NC_006146.1 + 33603 0.73 0.364838
Target:  5'- gGGUGGGCguGGUCCGcGGGUucggugCACCUg -3'
miRNA:   3'- aCCAUUCGguCCGGGCuCCCA------GUGGA- -5'
28747 5' -59.9 NC_006146.1 + 15960 0.68 0.630577
Target:  5'- gGGcAGGCCggucucGGGUCUGGGGGUCugUg -3'
miRNA:   3'- aCCaUUCGG------UCCGGGCUCCCAGugGa -5'
28747 5' -59.9 NC_006146.1 + 168113 0.68 0.640544
Target:  5'- cGGgaGGCCGGcgcgcGCCCG-GGGUC-CCg -3'
miRNA:   3'- aCCauUCGGUC-----CGGGCuCCCAGuGGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.