miRNA display CGI


Results 41 - 60 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28747 5' -59.9 NC_006146.1 + 56583 0.71 0.475608
Target:  5'- gGGgcGGCCGGGCgCCGAGcccgccgccGGUCuCCUc -3'
miRNA:   3'- aCCauUCGGUCCG-GGCUC---------CCAGuGGA- -5'
28747 5' -59.9 NC_006146.1 + 169163 0.67 0.7097
Target:  5'- cGGgagGGGCCGGcGCCUGcAGGGgggGCCg -3'
miRNA:   3'- aCCa--UUCGGUC-CGGGC-UCCCag-UGGa -5'
28747 5' -59.9 NC_006146.1 + 115237 0.66 0.757384
Target:  5'- aGG-GAGCCcagcugagAGGCCC-AGGGauUCACCg -3'
miRNA:   3'- aCCaUUCGG--------UCCGGGcUCCC--AGUGGa -5'
28747 5' -59.9 NC_006146.1 + 168657 0.66 0.737615
Target:  5'- cGcGUcGGUgGGGCCUGAGGGggcgcggcgauugUCGCCg -3'
miRNA:   3'- aC-CAuUCGgUCCGGGCUCCC-------------AGUGGa -5'
28747 5' -59.9 NC_006146.1 + 167299 0.67 0.7097
Target:  5'- cGGgagGGGCCGGcGCCUGcAGGGgggGCCg -3'
miRNA:   3'- aCCa--UUCGGUC-CGGGC-UCCCag-UGGa -5'
28747 5' -59.9 NC_006146.1 + 33349 0.69 0.551459
Target:  5'- gGGgcAGCCGGGUggccgCCGGuGGGUcCGCCg -3'
miRNA:   3'- aCCauUCGGUCCG-----GGCU-CCCA-GUGGa -5'
28747 5' -59.9 NC_006146.1 + 41402 0.71 0.475608
Target:  5'- aGGUGGGCCugauguccGCCUGGGGGgCACCc -3'
miRNA:   3'- aCCAUUCGGuc------CGGGCUCCCaGUGGa -5'
28747 5' -59.9 NC_006146.1 + 46905 0.71 0.457446
Target:  5'- aGcGUAGGCCGGGUUgaGGGGGUCGCa- -3'
miRNA:   3'- aC-CAUUCGGUCCGGg-CUCCCAGUGga -5'
28747 5' -59.9 NC_006146.1 + 167181 0.68 0.640544
Target:  5'- cGGgaGGCCGGcgcgcGCCCG-GGGUC-CCg -3'
miRNA:   3'- aCCauUCGGUC-----CGGGCuCCCAGuGGa -5'
28747 5' -59.9 NC_006146.1 + 137860 0.68 0.654485
Target:  5'- gGGUGGGCguguccCGGGCCCcgccccgggccggcaGGGGGUCcCCg -3'
miRNA:   3'- aCCAUUCG------GUCCGGG---------------CUCCCAGuGGa -5'
28747 5' -59.9 NC_006146.1 + 25193 0.68 0.649509
Target:  5'- gGGcAGGCCGGGUCUcgggucuGGGGGUCugUg -3'
miRNA:   3'- aCCaUUCGGUCCGGG-------CUCCCAGugGa -5'
28747 5' -59.9 NC_006146.1 + 126062 0.68 0.630577
Target:  5'- gGGUAGGguaaaCGGGCaCGAGGGgCGCCg -3'
miRNA:   3'- aCCAUUCg----GUCCGgGCUCCCaGUGGa -5'
28747 5' -59.9 NC_006146.1 + 34073 0.7 0.494122
Target:  5'- gUGGcacgGGGCCGGGgguCCCGGGGGgcaGCCg -3'
miRNA:   3'- -ACCa---UUCGGUCC---GGGCUCCCag-UGGa -5'
28747 5' -59.9 NC_006146.1 + 22071 0.67 0.719396
Target:  5'- cGGc-GGCCGGaCCCGAGGaGgCGCCUg -3'
miRNA:   3'- aCCauUCGGUCcGGGCUCC-CaGUGGA- -5'
28747 5' -59.9 NC_006146.1 + 15916 0.67 0.719396
Target:  5'- cGGc-GGCCGGaCCCGAGGaGgCGCCUg -3'
miRNA:   3'- aCCauUCGGUCcGGGCUCC-CaGUGGA- -5'
28747 5' -59.9 NC_006146.1 + 56393 0.67 0.699942
Target:  5'- gGGUAAGCguGGCCgcucgCGAGGGUgAg-- -3'
miRNA:   3'- aCCAUUCGguCCGG-----GCUCCCAgUgga -5'
28747 5' -59.9 NC_006146.1 + 138235 0.66 0.72902
Target:  5'- aGGUGuGUCAuuuuaGCCCGuuGGGUUACCUg -3'
miRNA:   3'- aCCAUuCGGUc----CGGGCu-CCCAGUGGA- -5'
28747 5' -59.9 NC_006146.1 + 28372 0.66 0.775783
Target:  5'- aGaGUcGGCCuAGGCCCGgggaguggagGGGGaUCGCCc -3'
miRNA:   3'- aC-CAuUCGG-UCCGGGC----------UCCC-AGUGGa -5'
28747 5' -59.9 NC_006146.1 + 159894 0.66 0.738566
Target:  5'- aGGgccucgAGGCCgGGGCCCucgaagauGGGGGgCACCa -3'
miRNA:   3'- aCCa-----UUCGG-UCCGGG--------CUCCCaGUGGa -5'
28747 5' -59.9 NC_006146.1 + 34405 0.66 0.72902
Target:  5'- aGGUGuGUCAuuuuaGCCCGuuGGGUUACCUg -3'
miRNA:   3'- aCCAUuCGGUc----CGGGCu-CCCAGUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.