miRNA display CGI


Results 41 - 60 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28747 5' -59.9 NC_006146.1 + 50531 0.67 0.670376
Target:  5'- aGGUcagGAGCCgcuccAGGuCCCGGGuGGgCACCUg -3'
miRNA:   3'- aCCA---UUCGG-----UCC-GGGCUC-CCaGUGGA- -5'
28747 5' -59.9 NC_006146.1 + 51571 0.66 0.757384
Target:  5'- cUGGgc-GCCgccgggagGGGCCCGGGGGa-GCCa -3'
miRNA:   3'- -ACCauuCGG--------UCCGGGCUCCCagUGGa -5'
28747 5' -59.9 NC_006146.1 + 52909 0.66 0.757384
Target:  5'- aUGGUcuGCguGGCCCcccGGGGG-CGCUg -3'
miRNA:   3'- -ACCAuuCGguCCGGG---CUCCCaGUGGa -5'
28747 5' -59.9 NC_006146.1 + 52992 0.66 0.76664
Target:  5'- cGGaccugccGGCCGuGGCCgCGGGGGUCgaugACCa -3'
miRNA:   3'- aCCau-----UCGGU-CCGG-GCUCCCAG----UGGa -5'
28747 5' -59.9 NC_006146.1 + 53115 0.68 0.660451
Target:  5'- aGGc-GGCCcGGCCCGGGGGagCGCg- -3'
miRNA:   3'- aCCauUCGGuCCGGGCUCCCa-GUGga -5'
28747 5' -59.9 NC_006146.1 + 55816 0.66 0.757384
Target:  5'- aUGaGUAcAGCCAGcGCCUGGGuGGgCACCc -3'
miRNA:   3'- -AC-CAU-UCGGUC-CGGGCUC-CCaGUGGa -5'
28747 5' -59.9 NC_006146.1 + 56393 0.67 0.699942
Target:  5'- gGGUAAGCguGGCCgcucgCGAGGGUgAg-- -3'
miRNA:   3'- aCCAUUCGguCCGG-----GCUCCCAgUgga -5'
28747 5' -59.9 NC_006146.1 + 56506 0.66 0.76664
Target:  5'- ----cAGUCGGGCCgCGGGGucGUCGCCg -3'
miRNA:   3'- accauUCGGUCCGG-GCUCC--CAGUGGa -5'
28747 5' -59.9 NC_006146.1 + 56583 0.71 0.475608
Target:  5'- gGGgcGGCCGGGCgCCGAGcccgccgccGGUCuCCUc -3'
miRNA:   3'- aCCauUCGGUCCG-GGCUC---------CCAGuGGA- -5'
28747 5' -59.9 NC_006146.1 + 57224 0.71 0.439661
Target:  5'- cGG-AGGCCGGGCCCGGGcccgaGcCACCUc -3'
miRNA:   3'- aCCaUUCGGUCCGGGCUCc----CaGUGGA- -5'
28747 5' -59.9 NC_006146.1 + 59839 0.67 0.703852
Target:  5'- cGGUGcGGCuCAGGCUCccgugacucagggagGAGGuGUCGCCa -3'
miRNA:   3'- aCCAU-UCG-GUCCGGG---------------CUCC-CAGUGGa -5'
28747 5' -59.9 NC_006146.1 + 60939 0.7 0.492256
Target:  5'- aGGUAGagacuGCUuucauugAGGCCCGgggguggGGGGUCACCUu -3'
miRNA:   3'- aCCAUU-----CGG-------UCCGGGC-------UCCCAGUGGA- -5'
28747 5' -59.9 NC_006146.1 + 61524 0.66 0.76664
Target:  5'- aGGgaGGCCuccGGuGUCCGGGGGaCGCCc -3'
miRNA:   3'- aCCauUCGG---UC-CGGGCUCCCaGUGGa -5'
28747 5' -59.9 NC_006146.1 + 62838 0.69 0.580901
Target:  5'- cUGGccgccguGGCCAGGCCgGAGGuucucuUCACCa -3'
miRNA:   3'- -ACCau-----UCGGUCCGGgCUCCc-----AGUGGa -5'
28747 5' -59.9 NC_006146.1 + 69577 0.66 0.76664
Target:  5'- cUGGUGggggaagauGGCCAGGUCCuGGGG-CAgCg -3'
miRNA:   3'- -ACCAU---------UCGGUCCGGGcUCCCaGUgGa -5'
28747 5' -59.9 NC_006146.1 + 77923 0.74 0.334527
Target:  5'- cGGgcGGCCucgcAGGUgCCGGGGGUCGCUg -3'
miRNA:   3'- aCCauUCGG----UCCG-GGCUCCCAGUGGa -5'
28747 5' -59.9 NC_006146.1 + 79618 0.66 0.72902
Target:  5'- cGGUGAGCUcGuCCCGgggacAGGGUCACa- -3'
miRNA:   3'- aCCAUUCGGuCcGGGC-----UCCCAGUGga -5'
28747 5' -59.9 NC_006146.1 + 86454 0.67 0.670376
Target:  5'- gGGgcAGCUGGGCuUUGAGGGggcaGCCUg -3'
miRNA:   3'- aCCauUCGGUCCG-GGCUCCCag--UGGA- -5'
28747 5' -59.9 NC_006146.1 + 86510 0.69 0.561228
Target:  5'- gGGgcAGCUGGGCuuGAGGGgcaACUg -3'
miRNA:   3'- aCCauUCGGUCCGggCUCCCag-UGGa -5'
28747 5' -59.9 NC_006146.1 + 86544 0.71 0.484823
Target:  5'- gGGgcAGCUGGGCuuGAGGGgCAgCUg -3'
miRNA:   3'- aCCauUCGGUCCGggCUCCCaGUgGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.