miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28748 3' -57.5 NC_006146.1 + 57932 0.66 0.880324
Target:  5'- -gCUGG--CCGGcGCCGCCAUgGUGCu -3'
miRNA:   3'- agGACCcaGGUCcCGGCGGUAaUACG- -5'
28748 3' -57.5 NC_006146.1 + 166532 0.66 0.880324
Target:  5'- gCCUGGGgagCCcgcGGGGCCgugGCCAcgucGCu -3'
miRNA:   3'- aGGACCCa--GG---UCCCGG---CGGUaauaCG- -5'
28748 3' -57.5 NC_006146.1 + 71247 0.66 0.880324
Target:  5'- cUCCUGGGgCCuggcggGGGGCgGCCucuacGCc -3'
miRNA:   3'- -AGGACCCaGG------UCCCGgCGGuaauaCG- -5'
28748 3' -57.5 NC_006146.1 + 145707 0.66 0.880324
Target:  5'- gCCUGGGagCAGGaGCgCGUCAgcuugAUGUc -3'
miRNA:   3'- aGGACCCagGUCC-CG-GCGGUaa---UACG- -5'
28748 3' -57.5 NC_006146.1 + 117540 0.66 0.873246
Target:  5'- cCCUcGGGgCCuGGGCCGCauucagGCu -3'
miRNA:   3'- aGGA-CCCaGGuCCCGGCGguaauaCG- -5'
28748 3' -57.5 NC_006146.1 + 142055 0.66 0.873246
Target:  5'- cUCUGGGgCCAcccGGGCUGCCGgg--GUc -3'
miRNA:   3'- aGGACCCaGGU---CCCGGCGGUaauaCG- -5'
28748 3' -57.5 NC_006146.1 + 145133 0.66 0.873246
Target:  5'- cUCUGGGgCCAcccGGGCUGCCGgg--GUc -3'
miRNA:   3'- aGGACCCaGGU---CCCGGCGGUaauaCG- -5'
28748 3' -57.5 NC_006146.1 + 148211 0.66 0.873246
Target:  5'- cUCUGGGgCCAcccGGGCUGCCGgg--GUc -3'
miRNA:   3'- aGGACCCaGGU---CCCGGCGGUaauaCG- -5'
28748 3' -57.5 NC_006146.1 + 151289 0.66 0.873246
Target:  5'- cUCUGGGgCCAcccGGGCUGCCGgg--GUc -3'
miRNA:   3'- aGGACCCaGGU---CCCGGCGGUaauaCG- -5'
28748 3' -57.5 NC_006146.1 + 154367 0.66 0.873246
Target:  5'- cUCUGGGgCCAcccGGGCUGCCGgg--GUc -3'
miRNA:   3'- aGGACCCaGGU---CCCGGCGGUaauaCG- -5'
28748 3' -57.5 NC_006146.1 + 157445 0.66 0.873246
Target:  5'- cUCUGGGgCCAcccGGGCUGCCGgg--GUc -3'
miRNA:   3'- aGGACCCaGGU---CCCGGCGGUaauaCG- -5'
28748 3' -57.5 NC_006146.1 + 118975 0.66 0.873246
Target:  5'- aCCgca--CCGGGGCCGCCcgUcgGUGCc -3'
miRNA:   3'- aGGacccaGGUCCCGGCGGuaA--UACG- -5'
28748 3' -57.5 NC_006146.1 + 56233 0.66 0.871082
Target:  5'- gUCCagcGGGUCCgcgggggcggaggcGGGGCCGUCcucg-GCg -3'
miRNA:   3'- -AGGa--CCCAGG--------------UCCCGGCGGuaauaCG- -5'
28748 3' -57.5 NC_006146.1 + 123059 0.66 0.865959
Target:  5'- gCC-GGGUCCAGGGaCGCgucc-UGCg -3'
miRNA:   3'- aGGaCCCAGGUCCCgGCGguaauACG- -5'
28748 3' -57.5 NC_006146.1 + 27614 0.66 0.865958
Target:  5'- cUCC-GGGUCCAcuGGGUgGCCAg----- -3'
miRNA:   3'- -AGGaCCCAGGU--CCCGgCGGUaauacg -5'
28748 3' -57.5 NC_006146.1 + 6444 0.66 0.865958
Target:  5'- cCCUgGGGUCCauGGGGCC-CCAa----- -3'
miRNA:   3'- aGGA-CCCAGG--UCCCGGcGGUaauacg -5'
28748 3' -57.5 NC_006146.1 + 157759 0.66 0.865958
Target:  5'- gCCUGGGaggUCCGGGGUguugaGCCugc-UGCc -3'
miRNA:   3'- aGGACCC---AGGUCCCGg----CGGuaauACG- -5'
28748 3' -57.5 NC_006146.1 + 151604 0.66 0.865958
Target:  5'- gCCUGGGaggUCCGGGGUguugaGCCugc-UGCc -3'
miRNA:   3'- aGGACCC---AGGUCCCGg----CGGuaauACG- -5'
28748 3' -57.5 NC_006146.1 + 148526 0.66 0.865958
Target:  5'- gCCUGGGaggUCCGGGGUguugaGCCugc-UGCc -3'
miRNA:   3'- aGGACCC---AGGUCCCGg----CGGuaauACG- -5'
28748 3' -57.5 NC_006146.1 + 145448 0.66 0.865958
Target:  5'- gCCUGGGaggUCCGGGGUguugaGCCugc-UGCc -3'
miRNA:   3'- aGGACCC---AGGUCCCGg----CGGuaauACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.