Results 21 - 40 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28748 | 5' | -53.6 | NC_006146.1 | + | 133833 | 0.77 | 0.475239 |
Target: 5'- gGGugAGGAUGGUggGCCCAGAcgcaGCCUCu -3' miRNA: 3'- -UCugUUUUACCG--CGGGUCUag--CGGAG- -5' |
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28748 | 5' | -53.6 | NC_006146.1 | + | 27678 | 0.67 | 0.940416 |
Target: 5'- gGGugGGAucaGGCuaaCCCAaGUCGCCUCa -3' miRNA: 3'- -UCugUUUua-CCGc--GGGUcUAGCGGAG- -5' |
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28748 | 5' | -53.6 | NC_006146.1 | + | 24600 | 0.67 | 0.940416 |
Target: 5'- gGGugGGAucaGGCuaaCCCAaGUCGCCUCa -3' miRNA: 3'- -UCugUUUua-CCGc--GGGUcUAGCGGAG- -5' |
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28748 | 5' | -53.6 | NC_006146.1 | + | 48640 | 0.68 | 0.913471 |
Target: 5'- cGGGCuccGGGcgGGUGCCCAG--CGCCUUc -3' miRNA: 3'- -UCUG---UUUuaCCGCGGGUCuaGCGGAG- -5' |
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28748 | 5' | -53.6 | NC_006146.1 | + | 169376 | 0.7 | 0.824648 |
Target: 5'- gGGGCAGGGcUGGCGCCgGGccgCGCCc- -3' miRNA: 3'- -UCUGUUUU-ACCGCGGgUCua-GCGGag -5' |
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28748 | 5' | -53.6 | NC_006146.1 | + | 13272 | 0.67 | 0.949464 |
Target: 5'- gGGACc----GGCGCCCcagagccccucGGGUCcGCCUCc -3' miRNA: 3'- -UCUGuuuuaCCGCGGG-----------UCUAG-CGGAG- -5' |
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28748 | 5' | -53.6 | NC_006146.1 | + | 99817 | 0.67 | 0.945062 |
Target: 5'- cGGCGAGggGGUGUUCGGG--GCCUCg -3' miRNA: 3'- uCUGUUUuaCCGCGGGUCUagCGGAG- -5' |
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28748 | 5' | -53.6 | NC_006146.1 | + | 112216 | 0.7 | 0.824648 |
Target: 5'- uGGACAGGGUGGCgGCCUGGGUgGUUg- -3' miRNA: 3'- -UCUGUUUUACCG-CGGGUCUAgCGGag -5' |
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28748 | 5' | -53.6 | NC_006146.1 | + | 65211 | 0.67 | 0.929855 |
Target: 5'- gGGGCccuGGGAgcccgGGCGUCCAGAggugaccUCGCUUCc -3' miRNA: 3'- -UCUG---UUUUa----CCGCGGGUCU-------AGCGGAG- -5' |
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28748 | 5' | -53.6 | NC_006146.1 | + | 110924 | 0.68 | 0.924994 |
Target: 5'- aGGACAGcAUGGUcucguGCCCcugcuuUCGCCUCc -3' miRNA: 3'- -UCUGUUuUACCG-----CGGGucu---AGCGGAG- -5' |
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28748 | 5' | -53.6 | NC_006146.1 | + | 68739 | 0.71 | 0.797877 |
Target: 5'- -cGCGGGGUGGUggagGCCCAGGUgGCCa- -3' miRNA: 3'- ucUGUUUUACCG----CGGGUCUAgCGGag -5' |
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28748 | 5' | -53.6 | NC_006146.1 | + | 57996 | 0.72 | 0.720331 |
Target: 5'- aGGACGAGcUGGagGCCCGGGUCucgGCCUUc -3' miRNA: 3'- -UCUGUUUuACCg-CGGGUCUAG---CGGAG- -5' |
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28748 | 5' | -53.6 | NC_006146.1 | + | 22506 | 0.67 | 0.949464 |
Target: 5'- gGGACc----GGCGCCCcagagccccucGGGUCcGCCUCc -3' miRNA: 3'- -UCUGuuuuaCCGCGGG-----------UCUAG-CGGAG- -5' |
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28748 | 5' | -53.6 | NC_006146.1 | + | 16350 | 0.67 | 0.949464 |
Target: 5'- gGGACc----GGCGCCCcagagccccucGGGUCcGCCUCc -3' miRNA: 3'- -UCUGuuuuaCCGCGGG-----------UCUAG-CGGAG- -5' |
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28748 | 5' | -53.6 | NC_006146.1 | + | 21522 | 0.67 | 0.940416 |
Target: 5'- gGGugGGAucaGGCuaaCCCAaGUCGCCUCa -3' miRNA: 3'- -UCugUUUua-CCGc--GGGUcUAGCGGAG- -5' |
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28748 | 5' | -53.6 | NC_006146.1 | + | 92444 | 0.69 | 0.880392 |
Target: 5'- gAGACuguAGcGGCGCCgGGAUgGCCa- -3' miRNA: 3'- -UCUGuu-UUaCCGCGGgUCUAgCGGag -5' |
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28748 | 5' | -53.6 | NC_006146.1 | + | 170307 | 0.7 | 0.824648 |
Target: 5'- gGGGCAGGGcUGGCGCCgGGccgCGCCc- -3' miRNA: 3'- -UCUGUUUU-ACCGCGGgUCua-GCGGag -5' |
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28748 | 5' | -53.6 | NC_006146.1 | + | 135 | 0.73 | 0.689684 |
Target: 5'- aGGACu--AUGGCGCCUGGAUgGCUg- -3' miRNA: 3'- -UCUGuuuUACCGCGGGUCUAgCGGag -5' |
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28748 | 5' | -53.6 | NC_006146.1 | + | 88259 | 0.68 | 0.913471 |
Target: 5'- cAGGCAAAAUccGGCGUgugCUGGGUCggGCCUCu -3' miRNA: 3'- -UCUGUUUUA--CCGCG---GGUCUAG--CGGAG- -5' |
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28748 | 5' | -53.6 | NC_006146.1 | + | 12287 | 0.67 | 0.940416 |
Target: 5'- gGGugGGAucaGGCuaaCCCAaGUCGCCUCa -3' miRNA: 3'- -UCugUUUua-CCGc--GGGUcUAGCGGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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