miRNA display CGI


Results 41 - 60 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28749 5' -64.9 NC_006146.1 + 56058 0.66 0.550036
Target:  5'- gCCCCUCCcgcgggaagGCgucCCaCCGGGCCaagUAGGUg- -3'
miRNA:   3'- -GGGGAGG---------UGa--GG-GGCCCGG---AUCCGgc -5'
28749 5' -64.9 NC_006146.1 + 56564 0.66 0.550036
Target:  5'- cCCCCgUCCAC-CUCCGucaggggcGGCCgGGcGCCGa -3'
miRNA:   3'- -GGGG-AGGUGaGGGGC--------CCGGaUC-CGGC- -5'
28749 5' -64.9 NC_006146.1 + 38352 0.66 0.550036
Target:  5'- -aUCUCaCGCUCcgaCCCGaGGCCUucgAGGCCa -3'
miRNA:   3'- ggGGAG-GUGAG---GGGC-CCGGA---UCCGGc -5'
28749 5' -64.9 NC_006146.1 + 31442 0.66 0.550036
Target:  5'- cCUUCUCCAgUgcaggcacccCCCCGGGCaccguggGGGCCu -3'
miRNA:   3'- -GGGGAGGUgA----------GGGGCCCGga-----UCCGGc -5'
28749 5' -64.9 NC_006146.1 + 9151 0.66 0.549109
Target:  5'- cCCCCUcggaccucagccgCCAC-CCCCGGGCUacaaGGGUUc -3'
miRNA:   3'- -GGGGA-------------GGUGaGGGGCCCGGa---UCCGGc -5'
28749 5' -64.9 NC_006146.1 + 149269 0.66 0.549109
Target:  5'- -gCCgugCCGCUCCgcguaggCCGGGuCCUcGGCCa -3'
miRNA:   3'- ggGGa--GGUGAGG-------GGCCC-GGAuCCGGc -5'
28749 5' -64.9 NC_006146.1 + 68909 0.66 0.549109
Target:  5'- gCCaCCg-CGCUCaaaauggacgagaCCgGGGCCUGGGCCc -3'
miRNA:   3'- -GG-GGagGUGAG-------------GGgCCCGGAUCCGGc -5'
28749 5' -64.9 NC_006146.1 + 71514 0.66 0.547255
Target:  5'- cCCCCUggCCgACUCgcuCCUGGGCCUcaacgcgcggcccgGGcGCCGa -3'
miRNA:   3'- -GGGGA--GG-UGAG---GGGCCCGGA--------------UC-CGGC- -5'
28749 5' -64.9 NC_006146.1 + 59245 0.66 0.540784
Target:  5'- -gCCUCCAUgggCCUggguguucaGGGCCU-GGCCGa -3'
miRNA:   3'- ggGGAGGUGa--GGGg--------CCCGGAuCCGGC- -5'
28749 5' -64.9 NC_006146.1 + 133338 0.66 0.540784
Target:  5'- aCCCCUagCCAacaaguCUCUCCGGGUCUGcuuGCCu -3'
miRNA:   3'- -GGGGA--GGU------GAGGGGCCCGGAUc--CGGc -5'
28749 5' -64.9 NC_006146.1 + 19939 0.66 0.540784
Target:  5'- aUCaaUCCGgcCUCCCUGGGCagaucaGGGCCGg -3'
miRNA:   3'- -GGggAGGU--GAGGGGCCCGga----UCCGGC- -5'
28749 5' -64.9 NC_006146.1 + 823 0.66 0.538018
Target:  5'- gCCCCUCCcgccggccauccccACgcgcggCCCCGGGCCcuccCCGa -3'
miRNA:   3'- -GGGGAGG--------------UGa-----GGGGCCCGGauccGGC- -5'
28749 5' -64.9 NC_006146.1 + 1755 0.66 0.538018
Target:  5'- gCCCCUCCcgccggccauccccACgcgcggCCCCGGGCCcuccCCGa -3'
miRNA:   3'- -GGGGAGG--------------UGa-----GGGGCCCGGauccGGC- -5'
28749 5' -64.9 NC_006146.1 + 2687 0.66 0.538018
Target:  5'- gCCCCUCCcgccggccauccccACgcgcggCCCCGGGCCcuccCCGa -3'
miRNA:   3'- -GGGGAGG--------------UGa-----GGGGCCCGGauccGGC- -5'
28749 5' -64.9 NC_006146.1 + 3619 0.66 0.538018
Target:  5'- gCCCCUCCcgccggccauccccACgcgcggCCCCGGGCCcuccCCGa -3'
miRNA:   3'- -GGGGAGG--------------UGa-----GGGGCCCGGauccGGC- -5'
28749 5' -64.9 NC_006146.1 + 69219 0.67 0.535257
Target:  5'- cCCCCUCUagcGCcgcccguagcccguuUCCCCccaGGGCC-AGGuCCGg -3'
miRNA:   3'- -GGGGAGG---UG---------------AGGGG---CCCGGaUCC-GGC- -5'
28749 5' -64.9 NC_006146.1 + 42954 0.67 0.531584
Target:  5'- gCCCUCCg--CCCCGGGCac--GCUGa -3'
miRNA:   3'- gGGGAGGugaGGGGCCCGgaucCGGC- -5'
28749 5' -64.9 NC_006146.1 + 42723 0.67 0.531584
Target:  5'- cCCCCUgggCCGCcUCCCGGcgucgcugcaucGCCUgcggcagcaGGGCCGa -3'
miRNA:   3'- -GGGGA---GGUGaGGGGCC------------CGGA---------UCCGGC- -5'
28749 5' -64.9 NC_006146.1 + 115101 0.67 0.522441
Target:  5'- cCUCUUCCACcgCCCCGaGUCgcuGGCCa -3'
miRNA:   3'- -GGGGAGGUGa-GGGGCcCGGau-CCGGc -5'
28749 5' -64.9 NC_006146.1 + 163784 0.67 0.522441
Target:  5'- aUCCUCUaguuaguauGCagCCUGGGCCUuggcGGGCCa -3'
miRNA:   3'- gGGGAGG---------UGagGGGCCCGGA----UCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.