miRNA display CGI


Results 41 - 60 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28751 5' -53.6 NC_006146.1 + 42709 0.67 0.935523
Target:  5'- cGGCGccgcGGCGCCCcccuGGGcCGCCUCc -3'
miRNA:   3'- uCUGUuuuaCCGCGGG----UCUaGCGGAG- -5'
28751 5' -53.6 NC_006146.1 + 23725 0.67 0.940415
Target:  5'- cGGGCGAAggGGCG-CCGGucugCGCCg- -3'
miRNA:   3'- -UCUGUUUuaCCGCgGGUCua--GCGGag -5'
28751 5' -53.6 NC_006146.1 + 143693 0.67 0.949034
Target:  5'- gGGACAGAGuuagaaguuagccUGGgGCCuCGGAggGCCUg -3'
miRNA:   3'- -UCUGUUUU-------------ACCgCGG-GUCUagCGGAg -5'
28751 5' -53.6 NC_006146.1 + 105700 0.67 0.949463
Target:  5'- cGGGCucccagGGCcCCCAGAgCGCCUa -3'
miRNA:   3'- -UCUGuuuua-CCGcGGGUCUaGCGGAg -5'
28751 5' -53.6 NC_006146.1 + 146770 0.66 0.952401
Target:  5'- gGGACAGAGuuagaaguuaggccUGGgGCCuCGGAggGCCUg -3'
miRNA:   3'- -UCUGUUUU--------------ACCgCGG-GUCUagCGGAg -5'
28751 5' -53.6 NC_006146.1 + 149848 0.66 0.952401
Target:  5'- gGGACAGAGuuagaaguuaggccUGGgGCCuCGGAggGCCUg -3'
miRNA:   3'- -UCUGUUUU--------------ACCgCGG-GUCUagCGGAg -5'
28751 5' -53.6 NC_006146.1 + 152926 0.66 0.952401
Target:  5'- gGGACAGAGuuagaaguuaggccUGGgGCCuCGGAggGCCUg -3'
miRNA:   3'- -UCUGUUUU--------------ACCgCGG-GUCUagCGGAg -5'
28751 5' -53.6 NC_006146.1 + 156004 0.66 0.952401
Target:  5'- gGGACAGAGuuagaaguuaggccUGGgGCCuCGGAggGCCUg -3'
miRNA:   3'- -UCUGUUUU--------------ACCgCGG-GUCUagCGGAg -5'
28751 5' -53.6 NC_006146.1 + 120760 0.66 0.956396
Target:  5'- cGACGAGcgcuggcGGCGCCUcaugucccuggcggAGGUCGCCg- -3'
miRNA:   3'- uCUGUUUua-----CCGCGGG--------------UCUAGCGGag -5'
28751 5' -53.6 NC_006146.1 + 128180 0.66 0.970962
Target:  5'- cGACGccGGGaGGCgGCCCAGGggggCGCCg- -3'
miRNA:   3'- uCUGU--UUUaCCG-CGGGUCUa---GCGGag -5'
28751 5' -53.6 NC_006146.1 + 167512 0.7 0.824648
Target:  5'- gGGGCAGGGcUGGCGCCgGGccgCGCCc- -3'
miRNA:   3'- -UCUGUUUU-ACCGCGGgUCua-GCGGag -5'
28751 5' -53.6 NC_006146.1 + 129117 0.7 0.824648
Target:  5'- aGGGCcugaGAGcgGGCGCCCGGGcgcaggGCCUCc -3'
miRNA:   3'- -UCUG----UUUuaCCGCGGGUCUag----CGGAG- -5'
28751 5' -53.6 NC_006146.1 + 112216 0.7 0.824648
Target:  5'- uGGACAGGGUGGCgGCCUGGGUgGUUg- -3'
miRNA:   3'- -UCUGUUUUACCG-CGGGUCUAgCGGag -5'
28751 5' -53.6 NC_006146.1 + 86521 0.71 0.806969
Target:  5'- gAGGCcauGAUGGcCGCCCGGuccaCGCCUa -3'
miRNA:   3'- -UCUGuu-UUACC-GCGGGUCua--GCGGAg -5'
28751 5' -53.6 NC_006146.1 + 68739 0.71 0.797877
Target:  5'- -cGCGGGGUGGUggagGCCCAGGUgGCCa- -3'
miRNA:   3'- ucUGUUUUACCG----CGGGUCUAgCGGag -5'
28751 5' -53.6 NC_006146.1 + 57996 0.72 0.720331
Target:  5'- aGGACGAGcUGGagGCCCGGGUCucgGCCUUc -3'
miRNA:   3'- -UCUGUUUuACCg-CGGGUCUAG---CGGAG- -5'
28751 5' -53.6 NC_006146.1 + 135 0.73 0.689684
Target:  5'- aGGACu--AUGGCGCCUGGAUgGCUg- -3'
miRNA:   3'- -UCUGuuuUACCGCGGGUCUAgCGGag -5'
28751 5' -53.6 NC_006146.1 + 126941 0.73 0.658588
Target:  5'- uGGCAGGAUGGCGCucuCCGGG-CGCgUCu -3'
miRNA:   3'- uCUGUUUUACCGCG---GGUCUaGCGgAG- -5'
28751 5' -53.6 NC_006146.1 + 4790 0.74 0.637732
Target:  5'- cAGuACGAGuuucuGCGCCCGGggCGCCUCa -3'
miRNA:   3'- -UC-UGUUUuac--CGCGGGUCuaGCGGAG- -5'
28751 5' -53.6 NC_006146.1 + 112114 0.74 0.606434
Target:  5'- gGGugGAGGUGGUGCUgGuGGUgGCCUCg -3'
miRNA:   3'- -UCugUUUUACCGCGGgU-CUAgCGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.