miRNA display CGI


Results 61 - 80 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28751 5' -53.6 NC_006146.1 + 67788 0.68 0.900961
Target:  5'- gGGACGuGAcGGCGgCCAGGcucugcccCGCCUCg -3'
miRNA:   3'- -UCUGUuUUaCCGCgGGUCUa-------GCGGAG- -5'
28751 5' -53.6 NC_006146.1 + 113668 0.68 0.900961
Target:  5'- cGACGAGagGUGGCucggGCCCGGGcccgGCCUCc -3'
miRNA:   3'- uCUGUUU--UACCG----CGGGUCUag--CGGAG- -5'
28751 5' -53.6 NC_006146.1 + 20279 0.68 0.90031
Target:  5'- cGugGAGGUGGCcgagaucGCCaAGAUCGCC-Ca -3'
miRNA:   3'- uCugUUUUACCG-------CGGgUCUAGCGGaG- -5'
28751 5' -53.6 NC_006146.1 + 155057 0.69 0.894342
Target:  5'- gGGACcuGGUGGCGCCCGc--CGgCUCc -3'
miRNA:   3'- -UCUGuuUUACCGCGGGUcuaGCgGAG- -5'
28751 5' -53.6 NC_006146.1 + 142745 0.69 0.894342
Target:  5'- gGGACcuGGUGGCGCCCGc--CGgCUCc -3'
miRNA:   3'- -UCUGuuUUACCGCGGGUcuaGCgGAG- -5'
28751 5' -53.6 NC_006146.1 + 148901 0.69 0.894342
Target:  5'- gGGACcuGGUGGCGCCCGc--CGgCUCc -3'
miRNA:   3'- -UCUGuuUUACCGCGGGUcuaGCgGAG- -5'
28751 5' -53.6 NC_006146.1 + 151979 0.69 0.894342
Target:  5'- gGGACcuGGUGGCGCCCGc--CGgCUCc -3'
miRNA:   3'- -UCUGuuUUACCGCGGGUcuaGCgGAG- -5'
28751 5' -53.6 NC_006146.1 + 145823 0.69 0.894342
Target:  5'- gGGACcuGGUGGCGCCCGc--CGgCUCc -3'
miRNA:   3'- -UCUGuuUUACCGCGGGUcuaGCgGAG- -5'
28751 5' -53.6 NC_006146.1 + 158136 0.69 0.894342
Target:  5'- gGGACcuGGUGGCGCCCGc--CGgCUCc -3'
miRNA:   3'- -UCUGuuUUACCGCGGGUcuaGCgGAG- -5'
28751 5' -53.6 NC_006146.1 + 68331 0.69 0.887484
Target:  5'- cGAgAGGAUGGCGUCgAGGaCGgCCUCc -3'
miRNA:   3'- uCUgUUUUACCGCGGgUCUaGC-GGAG- -5'
28751 5' -53.6 NC_006146.1 + 64366 0.69 0.887484
Target:  5'- uGGAguGGAUGGUGCCCaccaggGGAUgCGCC-Ca -3'
miRNA:   3'- -UCUguUUUACCGCGGG------UCUA-GCGGaG- -5'
28751 5' -53.6 NC_006146.1 + 116293 0.69 0.887484
Target:  5'- gAGGCGgccGGAUGGCGCCCccgcGGUCcUCUCc -3'
miRNA:   3'- -UCUGU---UUUACCGCGGGu---CUAGcGGAG- -5'
28751 5' -53.6 NC_006146.1 + 92444 0.69 0.880392
Target:  5'- gAGACuguAGcGGCGCCgGGAUgGCCa- -3'
miRNA:   3'- -UCUGuu-UUaCCGCGGgUCUAgCGGag -5'
28751 5' -53.6 NC_006146.1 + 128113 0.69 0.87307
Target:  5'- gGGACA--AUGGCGUCCAGGaggCGCg-- -3'
miRNA:   3'- -UCUGUuuUACCGCGGGUCUa--GCGgag -5'
28751 5' -53.6 NC_006146.1 + 124329 0.69 0.872326
Target:  5'- uGACGcuGcUGGCGCacgccacCCuGAUCGCCUCc -3'
miRNA:   3'- uCUGUuuU-ACCGCG-------GGuCUAGCGGAG- -5'
28751 5' -53.6 NC_006146.1 + 126248 0.69 0.857759
Target:  5'- gGGACcca--GGCGCCCGGGcuugggagaCGCCUCu -3'
miRNA:   3'- -UCUGuuuuaCCGCGGGUCUa--------GCGGAG- -5'
28751 5' -53.6 NC_006146.1 + 49547 0.69 0.857759
Target:  5'- gGGGCGGAGgccacgccGGCcagGCCCAGcAUgGCCUCg -3'
miRNA:   3'- -UCUGUUUUa-------CCG---CGGGUC-UAgCGGAG- -5'
28751 5' -53.6 NC_006146.1 + 167512 0.7 0.824648
Target:  5'- gGGGCAGGGcUGGCGCCgGGccgCGCCc- -3'
miRNA:   3'- -UCUGUUUU-ACCGCGGgUCua-GCGGag -5'
28751 5' -53.6 NC_006146.1 + 170307 0.7 0.824648
Target:  5'- gGGGCAGGGcUGGCGCCgGGccgCGCCc- -3'
miRNA:   3'- -UCUGUUUU-ACCGCGGgUCua-GCGGag -5'
28751 5' -53.6 NC_006146.1 + 169376 0.7 0.824648
Target:  5'- gGGGCAGGGcUGGCGCCgGGccgCGCCc- -3'
miRNA:   3'- -UCUGUUUU-ACCGCGGgUCua-GCGGag -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.