Results 1 - 20 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28754 | 5' | -53.6 | NC_006146.1 | + | 120598 | 0.66 | 0.970962 |
Target: 5'- uGGACAAGGcccggcGGCGCCugaCAGAUCuCCUg -3' miRNA: 3'- -UCUGUUUUa-----CCGCGG---GUCUAGcGGAg -5' |
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28754 | 5' | -53.6 | NC_006146.1 | + | 6013 | 0.66 | 0.970962 |
Target: 5'- gAGGCAAcgaGG-GCCCAGAUCcUCUCc -3' miRNA: 3'- -UCUGUUuuaCCgCGGGUCUAGcGGAG- -5' |
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28754 | 5' | -53.6 | NC_006146.1 | + | 118247 | 0.66 | 0.970962 |
Target: 5'- gGGGCGAGGcUGGaCGCCCucaugCGCCa- -3' miRNA: 3'- -UCUGUUUU-ACC-GCGGGucua-GCGGag -5' |
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28754 | 5' | -53.6 | NC_006146.1 | + | 54018 | 0.66 | 0.970962 |
Target: 5'- cGGCAccAGGUGGCGCCUccGGAgggCgGCCa- -3' miRNA: 3'- uCUGU--UUUACCGCGGG--UCUa--G-CGGag -5' |
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28754 | 5' | -53.6 | NC_006146.1 | + | 128180 | 0.66 | 0.970962 |
Target: 5'- cGACGccGGGaGGCgGCCCAGGggggCGCCg- -3' miRNA: 3'- uCUGU--UUUaCCG-CGGGUCUa---GCGGag -5' |
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28754 | 5' | -53.6 | NC_006146.1 | + | 85918 | 0.66 | 0.96794 |
Target: 5'- gGGGCuuuacccUGGgGCCUGGAUgGCCUg -3' miRNA: 3'- -UCUGuuuu---ACCgCGGGUCUAgCGGAg -5' |
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28754 | 5' | -53.6 | NC_006146.1 | + | 56583 | 0.66 | 0.96794 |
Target: 5'- gGGGCGGccgGGCGCCgAGccCGCCg- -3' miRNA: 3'- -UCUGUUuuaCCGCGGgUCuaGCGGag -5' |
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28754 | 5' | -53.6 | NC_006146.1 | + | 42384 | 0.66 | 0.967939 |
Target: 5'- uGGGCGAGG-GGCGcCCCAGGgccaccccgaCGCCg- -3' miRNA: 3'- -UCUGUUUUaCCGC-GGGUCUa---------GCGGag -5' |
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28754 | 5' | -53.6 | NC_006146.1 | + | 43372 | 0.66 | 0.967939 |
Target: 5'- gAGACGGAGuUGGUgaaGUUCAGGUUGCCccUCa -3' miRNA: 3'- -UCUGUUUU-ACCG---CGGGUCUAGCGG--AG- -5' |
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28754 | 5' | -53.6 | NC_006146.1 | + | 89848 | 0.66 | 0.967939 |
Target: 5'- -aACAcuuuGUGGCGCguCCucGAUUGCCUCa -3' miRNA: 3'- ucUGUuu--UACCGCG--GGu-CUAGCGGAG- -5' |
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28754 | 5' | -53.6 | NC_006146.1 | + | 96830 | 0.66 | 0.967626 |
Target: 5'- gGGACGGGcgGGCagguuggGCCCGcuUCaGCCUCu -3' miRNA: 3'- -UCUGUUUuaCCG-------CGGGUcuAG-CGGAG- -5' |
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28754 | 5' | -53.6 | NC_006146.1 | + | 97333 | 0.66 | 0.967309 |
Target: 5'- aGGAgAGGAUGGCGUCCGGccacaaccaccCGCC-Cg -3' miRNA: 3'- -UCUgUUUUACCGCGGGUCua---------GCGGaG- -5' |
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28754 | 5' | -53.6 | NC_006146.1 | + | 161762 | 0.66 | 0.966022 |
Target: 5'- gAGGucCGAGggGGCGCCUGGGcgggggccugaaucuUCGCCUg -3' miRNA: 3'- -UCU--GUUUuaCCGCGGGUCU---------------AGCGGAg -5' |
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28754 | 5' | -53.6 | NC_006146.1 | + | 40365 | 0.66 | 0.9647 |
Target: 5'- cGGCGGAGaaGGCcCCCuGGUCGCCg- -3' miRNA: 3'- uCUGUUUUa-CCGcGGGuCUAGCGGag -5' |
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28754 | 5' | -53.6 | NC_006146.1 | + | 160179 | 0.66 | 0.9647 |
Target: 5'- uGGCuc--UGGCuGCCCAGAuuauccUCGCCa- -3' miRNA: 3'- uCUGuuuuACCG-CGGGUCU------AGCGGag -5' |
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28754 | 5' | -53.6 | NC_006146.1 | + | 101894 | 0.66 | 0.9647 |
Target: 5'- uGGgAAAA-GGCGCCCAGGUCuggaGCUg- -3' miRNA: 3'- uCUgUUUUaCCGCGGGUCUAG----CGGag -5' |
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28754 | 5' | -53.6 | NC_006146.1 | + | 170638 | 0.66 | 0.9647 |
Target: 5'- cGGGCucccccucacGGGUGGCGCgCAGAUCGgCg- -3' miRNA: 3'- -UCUGu---------UUUACCGCGgGUCUAGCgGag -5' |
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28754 | 5' | -53.6 | NC_006146.1 | + | 134279 | 0.66 | 0.964364 |
Target: 5'- uGGCAGAAUuuaaaagugGGgGCCCGGGUCauugguuucuaaaGCUUCa -3' miRNA: 3'- uCUGUUUUA---------CCgCGGGUCUAG-------------CGGAG- -5' |
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28754 | 5' | -53.6 | NC_006146.1 | + | 152875 | 0.66 | 0.957548 |
Target: 5'- cGGugGAGGUGGC-CCCGGG-CGCa-- -3' miRNA: 3'- -UCugUUUUACCGcGGGUCUaGCGgag -5' |
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28754 | 5' | -53.6 | NC_006146.1 | + | 149797 | 0.66 | 0.957548 |
Target: 5'- cGGugGAGGUGGC-CCCGGG-CGCa-- -3' miRNA: 3'- -UCugUUUUACCGcGGGUCUaGCGgag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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