miRNA display CGI


Results 1 - 20 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28755 5' -64.9 NC_006146.1 + 125229 0.66 0.591255
Target:  5'- gCCCUUCCGCUCCCUGgcggagacGGUCUcccuggauuuuaugaAGGaCCu -3'
miRNA:   3'- -GGGGAGGUGAGGGGC--------CCGGA---------------UCC-GGc -5'
28755 5' -64.9 NC_006146.1 + 41322 0.66 0.590311
Target:  5'- gUCCCUCCcuguuucGCgCCCCaaccuaucuggcccaGGGCCUGgcggugguGGCCGu -3'
miRNA:   3'- -GGGGAGG-------UGaGGGG---------------CCCGGAU--------CCGGC- -5'
28755 5' -64.9 NC_006146.1 + 18358 0.66 0.587481
Target:  5'- aCCCCUUUgguggcauGCUCaCCCuGGuCCUGguGGCCGg -3'
miRNA:   3'- -GGGGAGG--------UGAG-GGGcCC-GGAU--CCGGC- -5'
28755 5' -64.9 NC_006146.1 + 62354 0.66 0.587481
Target:  5'- gCCCagCCACUCCaacgCCGcGCCggagAGGCCc -3'
miRNA:   3'- gGGGa-GGUGAGG----GGCcCGGa---UCCGGc -5'
28755 5' -64.9 NC_006146.1 + 46209 0.66 0.587481
Target:  5'- uCUCCUCCcagGCUUCCUGGaggaaaaugaaGCCggagggaGGGCCGg -3'
miRNA:   3'- -GGGGAGG---UGAGGGGCC-----------CGGa------UCCGGC- -5'
28755 5' -64.9 NC_006146.1 + 30214 0.66 0.587481
Target:  5'- gCCgCUgCGC-CCgCCGGGCU--GGCCGg -3'
miRNA:   3'- -GGgGAgGUGaGG-GGCCCGGauCCGGC- -5'
28755 5' -64.9 NC_006146.1 + 130440 0.66 0.587481
Target:  5'- cCCCCUUCAC-CCaCCaGGCCauuGCCGc -3'
miRNA:   3'- -GGGGAGGUGaGG-GGcCCGGaucCGGC- -5'
28755 5' -64.9 NC_006146.1 + 10997 0.66 0.587481
Target:  5'- gCCCC-CCAuCUUCgaGGGCCccGGCCu -3'
miRNA:   3'- -GGGGaGGU-GAGGggCCCGGauCCGGc -5'
28755 5' -64.9 NC_006146.1 + 164475 0.66 0.578065
Target:  5'- aCCCCagggcCCACauggCCCUGGGCCaaaGGGaCCc -3'
miRNA:   3'- -GGGGa----GGUGa---GGGGCCCGGa--UCC-GGc -5'
28755 5' -64.9 NC_006146.1 + 144722 0.66 0.578065
Target:  5'- cCCCCUCCGaccuaaUCCCCu--CC-AGGCCGc -3'
miRNA:   3'- -GGGGAGGUg-----AGGGGcccGGaUCCGGC- -5'
28755 5' -64.9 NC_006146.1 + 49698 0.66 0.578065
Target:  5'- cCUCCUCCACccUCUCCagGGGCCacggaauGCCGg -3'
miRNA:   3'- -GGGGAGGUG--AGGGG--CCCGGauc----CGGC- -5'
28755 5' -64.9 NC_006146.1 + 31323 0.66 0.578065
Target:  5'- gCCCC-CCGCagCCUCauuGGGCUUacAGGCCu -3'
miRNA:   3'- -GGGGaGGUGa-GGGG---CCCGGA--UCCGGc -5'
28755 5' -64.9 NC_006146.1 + 35299 0.66 0.578065
Target:  5'- gCCCCgggguugCCugUCUuagcacuaacuCCGGGCCUgaagAGGuuGa -3'
miRNA:   3'- -GGGGa------GGugAGG-----------GGCCCGGA----UCCggC- -5'
28755 5' -64.9 NC_006146.1 + 158060 0.66 0.568682
Target:  5'- gCCCCaggCGcCUCCUCGGGUCc-GGCCGc -3'
miRNA:   3'- -GGGGag-GU-GAGGGGCCCGGauCCGGC- -5'
28755 5' -64.9 NC_006146.1 + 82556 0.66 0.568682
Target:  5'- -gCCUCCuuuaACcCCCUGGGCCcaacGGCCu -3'
miRNA:   3'- ggGGAGG----UGaGGGGCCCGGau--CCGGc -5'
28755 5' -64.9 NC_006146.1 + 91747 0.66 0.568682
Target:  5'- -gCCUCCGUUCUCCGGGUucUUGGGUgGg -3'
miRNA:   3'- ggGGAGGUGAGGGGCCCG--GAUCCGgC- -5'
28755 5' -64.9 NC_006146.1 + 110006 0.66 0.568682
Target:  5'- --gCUCCuggaUCCaCUGGGCCccAGGCCGg -3'
miRNA:   3'- gggGAGGug--AGG-GGCCCGGa-UCCGGC- -5'
28755 5' -64.9 NC_006146.1 + 153292 0.66 0.568682
Target:  5'- gCCUuuUCUGCUCCaggcaccaggcCCGGGCC-AGGUCGc -3'
miRNA:   3'- gGGG--AGGUGAGG-----------GGCCCGGaUCCGGC- -5'
28755 5' -64.9 NC_006146.1 + 4376 0.66 0.568682
Target:  5'- gCCCCgcggGCUCCCCaGGCCgacGCCa -3'
miRNA:   3'- -GGGGagg-UGAGGGGcCCGGaucCGGc -5'
28755 5' -64.9 NC_006146.1 + 137574 0.66 0.568682
Target:  5'- gCCCCggagcacCCGgaCCCCGGaGCCccAGGaCCGa -3'
miRNA:   3'- -GGGGa------GGUgaGGGGCC-CGGa-UCC-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.