Results 21 - 40 of 314 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28755 | 5' | -64.9 | NC_006146.1 | + | 56564 | 0.66 | 0.550036 |
Target: 5'- cCCCCgUCCAC-CUCCGucaggggcGGCCgGGcGCCGa -3' miRNA: 3'- -GGGG-AGGUGaGGGGC--------CCGGaUC-CGGC- -5' |
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28755 | 5' | -64.9 | NC_006146.1 | + | 19939 | 0.66 | 0.540784 |
Target: 5'- aUCaaUCCGgcCUCCCUGGGCagaucaGGGCCGg -3' miRNA: 3'- -GGggAGGU--GAGGGGCCCGga----UCCGGC- -5' |
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28755 | 5' | -64.9 | NC_006146.1 | + | 18358 | 0.66 | 0.587481 |
Target: 5'- aCCCCUUUgguggcauGCUCaCCCuGGuCCUGguGGCCGg -3' miRNA: 3'- -GGGGAGG--------UGAG-GGGcCC-GGAU--CCGGC- -5' |
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28755 | 5' | -64.9 | NC_006146.1 | + | 10997 | 0.66 | 0.587481 |
Target: 5'- gCCCC-CCAuCUUCgaGGGCCccGGCCu -3' miRNA: 3'- -GGGGaGGU-GAGGggCCCGGauCCGGc -5' |
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28755 | 5' | -64.9 | NC_006146.1 | + | 137574 | 0.66 | 0.568682 |
Target: 5'- gCCCCggagcacCCGgaCCCCGGaGCCccAGGaCCGa -3' miRNA: 3'- -GGGGa------GGUgaGGGGCC-CGGa-UCC-GGC- -5' |
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28755 | 5' | -64.9 | NC_006146.1 | + | 110006 | 0.66 | 0.568682 |
Target: 5'- --gCUCCuggaUCCaCUGGGCCccAGGCCGg -3' miRNA: 3'- gggGAGGug--AGG-GGCCCGGa-UCCGGC- -5' |
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28755 | 5' | -64.9 | NC_006146.1 | + | 91747 | 0.66 | 0.568682 |
Target: 5'- -gCCUCCGUUCUCCGGGUucUUGGGUgGg -3' miRNA: 3'- ggGGAGGUGAGGGGCCCG--GAUCCGgC- -5' |
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28755 | 5' | -64.9 | NC_006146.1 | + | 158060 | 0.66 | 0.568682 |
Target: 5'- gCCCCaggCGcCUCCUCGGGUCc-GGCCGc -3' miRNA: 3'- -GGGGag-GU-GAGGGGCCCGGauCCGGC- -5' |
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28755 | 5' | -64.9 | NC_006146.1 | + | 127552 | 0.66 | 0.567745 |
Target: 5'- cCCCCUgCCacgggcugcgccuGCUggCCCUGGGCggccgAGGCCGc -3' miRNA: 3'- -GGGGA-GG-------------UGA--GGGGCCCGga---UCCGGC- -5' |
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28755 | 5' | -64.9 | NC_006146.1 | + | 106466 | 0.66 | 0.56307 |
Target: 5'- gCCCCUCUGuCUCCuggcagcguacgccgCCGuGGCCccGGCCu -3' miRNA: 3'- -GGGGAGGU-GAGG---------------GGC-CCGGauCCGGc -5' |
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28755 | 5' | -64.9 | NC_006146.1 | + | 71514 | 0.66 | 0.547255 |
Target: 5'- cCCCCUggCCgACUCgcuCCUGGGCCUcaacgcgcggcccgGGcGCCGa -3' miRNA: 3'- -GGGGA--GG-UGAG---GGGCCCGGA--------------UC-CGGC- -5' |
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28755 | 5' | -64.9 | NC_006146.1 | + | 125229 | 0.66 | 0.591255 |
Target: 5'- gCCCUUCCGCUCCCUGgcggagacGGUCUcccuggauuuuaugaAGGaCCu -3' miRNA: 3'- -GGGGAGGUGAGGGGC--------CCGGA---------------UCC-GGc -5' |
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28755 | 5' | -64.9 | NC_006146.1 | + | 3619 | 0.66 | 0.538018 |
Target: 5'- gCCCCUCCcgccggccauccccACgcgcggCCCCGGGCCcuccCCGa -3' miRNA: 3'- -GGGGAGG--------------UGa-----GGGGCCCGGauccGGC- -5' |
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28755 | 5' | -64.9 | NC_006146.1 | + | 2687 | 0.66 | 0.538018 |
Target: 5'- gCCCCUCCcgccggccauccccACgcgcggCCCCGGGCCcuccCCGa -3' miRNA: 3'- -GGGGAGG--------------UGa-----GGGGCCCGGauccGGC- -5' |
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28755 | 5' | -64.9 | NC_006146.1 | + | 1755 | 0.66 | 0.538018 |
Target: 5'- gCCCCUCCcgccggccauccccACgcgcggCCCCGGGCCcuccCCGa -3' miRNA: 3'- -GGGGAGG--------------UGa-----GGGGCCCGGauccGGC- -5' |
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28755 | 5' | -64.9 | NC_006146.1 | + | 823 | 0.66 | 0.538018 |
Target: 5'- gCCCCUCCcgccggccauccccACgcgcggCCCCGGGCCcuccCCGa -3' miRNA: 3'- -GGGGAGG--------------UGa-----GGGGCCCGGauccGGC- -5' |
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28755 | 5' | -64.9 | NC_006146.1 | + | 12365 | 0.66 | 0.553751 |
Target: 5'- -nCCUCCGCgUCCCCguccuccagagucacGGGCUacAGGCCc -3' miRNA: 3'- ggGGAGGUG-AGGGG---------------CCCGGa-UCCGGc -5' |
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28755 | 5' | -64.9 | NC_006146.1 | + | 9151 | 0.66 | 0.549109 |
Target: 5'- cCCCCUcggaccucagccgCCAC-CCCCGGGCUacaaGGGUUc -3' miRNA: 3'- -GGGGA-------------GGUGaGGGGCCCGGa---UCCGGc -5' |
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28755 | 5' | -64.9 | NC_006146.1 | + | 138853 | 0.66 | 0.559337 |
Target: 5'- gCUCgCCACg-CCCGGGucaugaCCUGGGCCa -3' miRNA: 3'- gGGGaGGUGagGGGCCC------GGAUCCGGc -5' |
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28755 | 5' | -64.9 | NC_006146.1 | + | 10803 | 0.66 | 0.559337 |
Target: 5'- aUCCUCCACUagaggccgCCCaUGGGCCaugagaUAGGCUc -3' miRNA: 3'- gGGGAGGUGA--------GGG-GCCCGG------AUCCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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