Results 21 - 40 of 314 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28755 | 5' | -64.9 | NC_006146.1 | + | 4585 | 0.7 | 0.356599 |
Target: 5'- cCCCCaUCCGCUCUCUGaGCCUAGaCCc -3' miRNA: 3'- -GGGG-AGGUGAGGGGCcCGGAUCcGGc -5' |
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28755 | 5' | -64.9 | NC_006146.1 | + | 9151 | 0.66 | 0.549109 |
Target: 5'- cCCCCUcggaccucagccgCCAC-CCCCGGGCUacaaGGGUUc -3' miRNA: 3'- -GGGGA-------------GGUGaGGGGCCCGGa---UCCGGc -5' |
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28755 | 5' | -64.9 | NC_006146.1 | + | 10803 | 0.66 | 0.559337 |
Target: 5'- aUCCUCCACUagaggccgCCCaUGGGCCaugagaUAGGCUc -3' miRNA: 3'- gGGGAGGUGA--------GGG-GCCCGG------AUCCGGc -5' |
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28755 | 5' | -64.9 | NC_006146.1 | + | 10997 | 0.66 | 0.587481 |
Target: 5'- gCCCC-CCAuCUUCgaGGGCCccGGCCu -3' miRNA: 3'- -GGGGaGGU-GAGGggCCCGGauCCGGc -5' |
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28755 | 5' | -64.9 | NC_006146.1 | + | 11837 | 0.72 | 0.253049 |
Target: 5'- aCCCCUugcgccgggccCUGCUUCUCGGGCUUGGGgCGg -3' miRNA: 3'- -GGGGA-----------GGUGAGGGGCCCGGAUCCgGC- -5' |
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28755 | 5' | -64.9 | NC_006146.1 | + | 12342 | 0.77 | 0.122822 |
Target: 5'- uCCCCU-CGC-CCCUGGGCCUcAGGCCc -3' miRNA: 3'- -GGGGAgGUGaGGGGCCCGGA-UCCGGc -5' |
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28755 | 5' | -64.9 | NC_006146.1 | + | 12365 | 0.66 | 0.553751 |
Target: 5'- -nCCUCCGCgUCCCCguccuccagagucacGGGCUacAGGCCc -3' miRNA: 3'- ggGGAGGUG-AGGGG---------------CCCGGa-UCCGGc -5' |
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28755 | 5' | -64.9 | NC_006146.1 | + | 13047 | 0.69 | 0.41042 |
Target: 5'- aUCCUCCGagaCUCCGGGCCccaaggcGGCCGc -3' miRNA: 3'- gGGGAGGUga-GGGGCCCGGau-----CCGGC- -5' |
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28755 | 5' | -64.9 | NC_006146.1 | + | 13416 | 0.71 | 0.321303 |
Target: 5'- -aCCUCagggugcCUCCCCGGGuCCcAGGCCa -3' miRNA: 3'- ggGGAGgu-----GAGGGGCCC-GGaUCCGGc -5' |
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28755 | 5' | -64.9 | NC_006146.1 | + | 13679 | 0.73 | 0.234508 |
Target: 5'- cCCCCUCCACcccagucccccccCCCCGcuuucGGCCUcucggguccaccAGGCCGg -3' miRNA: 3'- -GGGGAGGUGa------------GGGGC-----CCGGA------------UCCGGC- -5' |
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28755 | 5' | -64.9 | NC_006146.1 | + | 13811 | 0.72 | 0.276387 |
Target: 5'- cCCCCUCagcuuguCUCCCCaccGGGUCcaucAGGCCGg -3' miRNA: 3'- -GGGGAGgu-----GAGGGG---CCCGGa---UCCGGC- -5' |
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28755 | 5' | -64.9 | NC_006146.1 | + | 13930 | 0.75 | 0.167491 |
Target: 5'- cCCCCUCCucucuccCUCCCCGaGGCCccGGCUc -3' miRNA: 3'- -GGGGAGGu------GAGGGGC-CCGGauCCGGc -5' |
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28755 | 5' | -64.9 | NC_006146.1 | + | 13979 | 0.67 | 0.477725 |
Target: 5'- gCCCgucagcgCCGC-CaCCCaGGCCUcGGCCGg -3' miRNA: 3'- gGGGa------GGUGaG-GGGcCCGGAuCCGGC- -5' |
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28755 | 5' | -64.9 | NC_006146.1 | + | 14031 | 0.7 | 0.335101 |
Target: 5'- gCCCCgUCCACccugUCCCCcgcaGGCC-AGGCCc -3' miRNA: 3'- -GGGG-AGGUG----AGGGGc---CCGGaUCCGGc -5' |
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28755 | 5' | -64.9 | NC_006146.1 | + | 14083 | 0.68 | 0.43498 |
Target: 5'- uCCCCaCCcCUCCCCGGccacCCcAGGCCc -3' miRNA: 3'- -GGGGaGGuGAGGGGCCc---GGaUCCGGc -5' |
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28755 | 5' | -64.9 | NC_006146.1 | + | 14197 | 0.67 | 0.51336 |
Target: 5'- cCCCCUuuGC-CCCCuGGC--AGGCCa -3' miRNA: 3'- -GGGGAggUGaGGGGcCCGgaUCCGGc -5' |
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28755 | 5' | -64.9 | NC_006146.1 | + | 14387 | 0.7 | 0.34216 |
Target: 5'- gCCUC-CCGCUCCCCuccGGGCCgcguacGCCGu -3' miRNA: 3'- -GGGGaGGUGAGGGG---CCCGGauc---CGGC- -5' |
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28755 | 5' | -64.9 | NC_006146.1 | + | 14876 | 0.69 | 0.394532 |
Target: 5'- gCCCUCCagGCcCUCCGaGGCCccAGGCCu -3' miRNA: 3'- gGGGAGG--UGaGGGGC-CCGGa-UCCGGc -5' |
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28755 | 5' | -64.9 | NC_006146.1 | + | 15027 | 0.66 | 0.559337 |
Target: 5'- aCCUUCCAgg-CCCGGGCCcccaggucucGGGCCa -3' miRNA: 3'- gGGGAGGUgagGGGCCCGGa---------UCCGGc -5' |
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28755 | 5' | -64.9 | NC_006146.1 | + | 15421 | 0.77 | 0.122822 |
Target: 5'- uCCCCU-CGC-CCCUGGGCCUcAGGCCc -3' miRNA: 3'- -GGGGAgGUGaGGGGCCCGGA-UCCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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