miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28757 3' -49.1 NC_006146.1 + 71385 0.69 0.978529
Target:  5'- uGACUGCuGGuggccGAGGGCgacguugcauuuuggGCAGGUAGg -3'
miRNA:   3'- uUUGACGuCUu----UUCCCGa--------------CGUCUAUC- -5'
28757 3' -49.1 NC_006146.1 + 72514 0.67 0.993317
Target:  5'- --cCUGCGGAGGAGcggacGGCUGCGGc--- -3'
miRNA:   3'- uuuGACGUCUUUUC-----CCGACGUCuauc -5'
28757 3' -49.1 NC_006146.1 + 76577 0.72 0.925666
Target:  5'- -cAUUGCGGGAuGGGGCcGCAGAg-- -3'
miRNA:   3'- uuUGACGUCUUuUCCCGaCGUCUauc -5'
28757 3' -49.1 NC_006146.1 + 77828 0.69 0.978282
Target:  5'- aGGACgGCGGAGggGGGGGCggGgGGGUGGg -3'
miRNA:   3'- -UUUGaCGUCUU--UUCCCGa-CgUCUAUC- -5'
28757 3' -49.1 NC_006146.1 + 79120 0.68 0.991561
Target:  5'- uGAGCUGCAGGAAaucaagccaugggucGGGGaggaGCAGAUu- -3'
miRNA:   3'- -UUUGACGUCUUU---------------UCCCga--CGUCUAuc -5'
28757 3' -49.1 NC_006146.1 + 80703 0.66 0.997668
Target:  5'- cGAGCaGCgaAGAAGAGGGCggccgagauucggacUcGCAGAUGGa -3'
miRNA:   3'- -UUUGaCG--UCUUUUCCCG---------------A-CGUCUAUC- -5'
28757 3' -49.1 NC_006146.1 + 88585 0.68 0.989742
Target:  5'- gGAGCUGguGggGgcuGGGGCUGUu-GUGGc -3'
miRNA:   3'- -UUUGACguCuuU---UCCCGACGucUAUC- -5'
28757 3' -49.1 NC_006146.1 + 89464 0.68 0.989742
Target:  5'- -uGCaGCGGGAGuuuucuGGGUUGCGGGUAa -3'
miRNA:   3'- uuUGaCGUCUUUu-----CCCGACGUCUAUc -5'
28757 3' -49.1 NC_006146.1 + 89806 0.71 0.936637
Target:  5'- aGGACgagGCAGAGgcGGGGGCgUGgAGGUGGa -3'
miRNA:   3'- -UUUGa--CGUCUU--UUCCCG-ACgUCUAUC- -5'
28757 3' -49.1 NC_006146.1 + 94952 0.67 0.995817
Target:  5'- -cGCUGCgguAGAGGGGGGUgUGCAGccAGg -3'
miRNA:   3'- uuUGACG---UCUUUUCCCG-ACGUCuaUC- -5'
28757 3' -49.1 NC_006146.1 + 96823 0.66 0.997494
Target:  5'- --cCUGguGggGAcGGGCggGCAGGuUGGg -3'
miRNA:   3'- uuuGACguCuuUU-CCCGa-CGUCU-AUC- -5'
28757 3' -49.1 NC_006146.1 + 103722 0.67 0.992258
Target:  5'- cGGACUGCGGAGGAagcGGGCgaaggUGUAGGa-- -3'
miRNA:   3'- -UUUGACGUCUUUU---CCCG-----ACGUCUauc -5'
28757 3' -49.1 NC_006146.1 + 105314 0.66 0.996273
Target:  5'- cAGACUGCgaaauggaccccauGGAGGAGGGUgagGUAGAc-- -3'
miRNA:   3'- -UUUGACG--------------UCUUUUCCCGa--CGUCUauc -5'
28757 3' -49.1 NC_006146.1 + 107392 0.68 0.988265
Target:  5'- aAAGCguaGCAGGGuccAGGGCUGCGGcGUGc -3'
miRNA:   3'- -UUUGa--CGUCUUu--UCCCGACGUC-UAUc -5'
28757 3' -49.1 NC_006146.1 + 107593 0.69 0.980658
Target:  5'- ----gGCAGAGcAGGGCaGCAGAcAGg -3'
miRNA:   3'- uuugaCGUCUUuUCCCGaCGUCUaUC- -5'
28757 3' -49.1 NC_006146.1 + 115014 0.73 0.893461
Target:  5'- gGAGCUGguGGAgcGGGgaGCAGggGGa -3'
miRNA:   3'- -UUUGACguCUUuuCCCgaCGUCuaUC- -5'
28757 3' -49.1 NC_006146.1 + 125147 0.71 0.931289
Target:  5'- -cGCUGUAGGAGAGGaGCUGCccccGGAg-- -3'
miRNA:   3'- uuUGACGUCUUUUCC-CGACG----UCUauc -5'
28757 3' -49.1 NC_006146.1 + 131602 0.67 0.993317
Target:  5'- -uACUGUGGuaguGGGGGCUGUGGuaGUGGg -3'
miRNA:   3'- uuUGACGUCuu--UUCCCGACGUC--UAUC- -5'
28757 3' -49.1 NC_006146.1 + 132075 0.67 0.994257
Target:  5'- uGAGCUGCcccAGGcucAGGGccuGGCUGCAGAUGu -3'
miRNA:   3'- -UUUGACG---UCU---UUUC---CCGACGUCUAUc -5'
28757 3' -49.1 NC_006146.1 + 133816 0.69 0.982835
Target:  5'- cAACUGCucaGGGGAGGGGgUGaGGAUGGu -3'
miRNA:   3'- uUUGACG---UCUUUUCCCgACgUCUAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.