miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28757 3' -49.1 NC_006146.1 + 8568 0.71 0.946516
Target:  5'- uAGCUGCAGccc-GGGCUGCAGc--- -3'
miRNA:   3'- uUUGACGUCuuuuCCCGACGUCuauc -5'
28757 3' -49.1 NC_006146.1 + 14976 0.69 0.975696
Target:  5'- cAACggGCaaGGGAGAGGGCUGCGGc--- -3'
miRNA:   3'- uUUGa-CG--UCUUUUCCCGACGUCuauc -5'
28757 3' -49.1 NC_006146.1 + 24186 0.68 0.991069
Target:  5'- uGGACaggGCAGAGGAGGGCUGgGccuGcgAGg -3'
miRNA:   3'- -UUUGa--CGUCUUUUCCCGACgU---CuaUC- -5'
28757 3' -49.1 NC_006146.1 + 30253 0.68 0.986628
Target:  5'- uGGCcGCA-AAAAGGGCUGUAGAg-- -3'
miRNA:   3'- uUUGaCGUcUUUUCCCGACGUCUauc -5'
28757 3' -49.1 NC_006146.1 + 39775 0.67 0.992258
Target:  5'- cAGACgcgGCAGGugcuGGCUGgAGAUAGg -3'
miRNA:   3'- -UUUGa--CGUCUuuucCCGACgUCUAUC- -5'
28757 3' -49.1 NC_006146.1 + 41070 0.7 0.959334
Target:  5'- -cGCU-CGGAcgGGGGCgugGCGGGUGGg -3'
miRNA:   3'- uuUGAcGUCUuuUCCCGa--CGUCUAUC- -5'
28757 3' -49.1 NC_006146.1 + 44266 0.77 0.687186
Target:  5'- uAACaGCGGGuAAAGGGCUGCAGAg-- -3'
miRNA:   3'- uUUGaCGUCU-UUUCCCGACGUCUauc -5'
28757 3' -49.1 NC_006146.1 + 44531 0.71 0.946048
Target:  5'- uGACggGCGGAGgacggugGGGGGCUGCGG-UGGa -3'
miRNA:   3'- uUUGa-CGUCUU-------UUCCCGACGUCuAUC- -5'
28757 3' -49.1 NC_006146.1 + 48227 0.66 0.997909
Target:  5'- ---aUG-AGAagGAGGGGCUGCAGAc-- -3'
miRNA:   3'- uuugACgUCU--UUUCCCGACGUCUauc -5'
28757 3' -49.1 NC_006146.1 + 49580 0.72 0.900441
Target:  5'- -cGCUGaggcCAGGGuGGGGCUGUGGAUGGu -3'
miRNA:   3'- uuUGAC----GUCUUuUCCCGACGUCUAUC- -5'
28757 3' -49.1 NC_006146.1 + 51160 0.69 0.978282
Target:  5'- uAGCUGuCGGAGu-GGGCUGUGGAgccgGGg -3'
miRNA:   3'- uUUGAC-GUCUUuuCCCGACGUCUa---UC- -5'
28757 3' -49.1 NC_006146.1 + 51176 0.69 0.980658
Target:  5'- uGGgUGUGGAAGGGGGuCUGCGGGcUGGc -3'
miRNA:   3'- uUUgACGUCUUUUCCC-GACGUCU-AUC- -5'
28757 3' -49.1 NC_006146.1 + 51465 0.66 0.997494
Target:  5'- aGAGgUGUGGAGAugggcgGGGGCUGCGGc--- -3'
miRNA:   3'- -UUUgACGUCUUU------UCCCGACGUCuauc -5'
28757 3' -49.1 NC_006146.1 + 52065 0.68 0.988265
Target:  5'- gAAACgguaGCAuGAcgGGAGGGCUGCGGucgGGg -3'
miRNA:   3'- -UUUGa---CGU-CU--UUUCCCGACGUCua-UC- -5'
28757 3' -49.1 NC_006146.1 + 54859 0.66 0.997494
Target:  5'- aAGGCgGCcgGGAAAAauGGGCUGCGGGcgUAGc -3'
miRNA:   3'- -UUUGaCG--UCUUUU--CCCGACGUCU--AUC- -5'
28757 3' -49.1 NC_006146.1 + 56158 0.66 0.997909
Target:  5'- cAAGCUGCAGcAGAGGauaGGCUGCGu---- -3'
miRNA:   3'- -UUUGACGUC-UUUUC---CCGACGUcuauc -5'
28757 3' -49.1 NC_006146.1 + 57063 0.71 0.931289
Target:  5'- ----gGCGGGAGGGGGCcugacGCGGAUGGc -3'
miRNA:   3'- uuugaCGUCUUUUCCCGa----CGUCUAUC- -5'
28757 3' -49.1 NC_006146.1 + 60612 0.66 0.997012
Target:  5'- --cCUGCu----GGGGCUGCGGAg-- -3'
miRNA:   3'- uuuGACGucuuuUCCCGACGUCUauc -5'
28757 3' -49.1 NC_006146.1 + 61829 0.66 0.997909
Target:  5'- -cGCUGguGggGgcaguGGGGCUGguGccGGg -3'
miRNA:   3'- uuUGACguCuuU-----UCCCGACguCuaUC- -5'
28757 3' -49.1 NC_006146.1 + 64897 0.74 0.846259
Target:  5'- uGGACUGaAGAAAGGGGUcGUGGAUGGg -3'
miRNA:   3'- -UUUGACgUCUUUUCCCGaCGUCUAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.